View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3526_low_27 (Length: 285)
Name: NF3526_low_27
Description: NF3526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3526_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 17 - 279
Target Start/End: Original strand, 22912490 - 22912752
Alignment:
| Q |
17 |
ccaacaatcataaacataatcaaccaaaattatactctcgctctcacattcccttacttgttcaataggtcttttaccacaaactacctcaagtaaaaat |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22912490 |
ccaacaatcataaacataatcaaccaaaattatactctcactctcacattcccttacttgttcaataggtcttttaccacaaactacctcaagtaaaaat |
22912589 |
T |
|
| Q |
117 |
gcaccaaatgaatacacatcagaacttgttgtagctttacctgttcttgtatgttcaggtgctaaataaccaagtgttccaacaacatgtgtagtttgag |
216 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
22912590 |
gcaccaaaagaatacacatcagaacttgttgtagctttacctgttcttgtatgttctggtgctaaataaccaagtgttccaacaacatgtgttgtttgag |
22912689 |
T |
|
| Q |
217 |
gatctgttccatgatcatataatcttgatagaccaaaatcacctaatctaccattcatctcac |
279 |
Q |
| |
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|||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |
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| T |
22912690 |
gatcagttccatgatcatataatcttgataaaccaaaatcacctaatctaccattcatttcac |
22912752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 77 - 273
Target Start/End: Original strand, 22897154 - 22897350
Alignment:
| Q |
77 |
ttcaataggtcttttaccacaaactacctcaagtaaaaatgcaccaaatgaatacacatcagaacttgttgtagctttacctgttcttgtatgttcaggt |
176 |
Q |
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||||||||| ||| |||||||| | ||||| || | |||||||||||| ||| ||||||||||| | | ||||| ||||||||||| |||||||||||| |
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| T |
22897154 |
ttcaataggccttctaccacaagcaacctcgagaagaaatgcaccaaaagaaaacacatcagaaaatttagtagccttacctgttctagtatgttcaggt |
22897253 |
T |
|
| Q |
177 |
gctaaataaccaagtgttccaacaacatgtgtagtttgaggatctgttccatgatcatataatcttgatagaccaaaatcacctaatctaccattca |
273 |
Q |
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| T |
22897254 |
gctagataccctacagttccaaccaaatgagttgtgtgaggatcagcaccatgatcatacaaccttgcaagaccaaaatctcctaatctaccattca |
22897350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 91 - 271
Target Start/End: Original strand, 22804235 - 22804415
Alignment:
| Q |
91 |
taccacaaactacctcaagtaaaaatgcaccaaatgaatacacatcagaacttgttgtagctttacctgttcttgtatgttcaggtgctaaataaccaag |
190 |
Q |
| |
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|||||||||| |||||||| | |||||||||||| ||| ||||||||||| | | ||||| ||||||||||| |||| ||||| || | |||||||| |
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| T |
22804235 |
taccacaaacaacctcaagaagaaatgcaccaaaagaaaacacatcagaaaatttagtagccttacctgttctaatatgatcaggagcaagataaccaaa |
22804334 |
T |
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| Q |
191 |
tgttccaacaacatgtgtagtttgaggatctgttccatgatcatataatcttgatagaccaaaatcacctaatctaccatt |
271 |
Q |
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| T |
22804335 |
agttccaaccaaatgagtagtgtgaggatcagcaccatgatcatacaaccttgaaagaccaaaatctcccaatctagcatt |
22804415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 91 - 271
Target Start/End: Original strand, 22838951 - 22839131
Alignment:
| Q |
91 |
taccacaaactacctcaagtaaaaatgcaccaaatgaatacacatcagaacttgttgtagctttacctgttcttgtatgttcaggtgctaaataaccaag |
190 |
Q |
| |
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|||||||||| |||||||| | |||||||||||| ||| ||||||||||| | | ||||| ||||||||||| |||| ||||| || | |||||||| |
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| T |
22838951 |
taccacaaacaacctcaagaagaaatgcaccaaaagaaaacacatcagaaaatttagtagccttacctgttctaatatgatcaggagcaagataaccaaa |
22839050 |
T |
|
| Q |
191 |
tgttccaacaacatgtgtagtttgaggatctgttccatgatcatataatcttgatagaccaaaatcacctaatctaccatt |
271 |
Q |
| |
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|||||||| | ||| ||||| |||||||| | ||||||||||| || ||||| ||||||||||| || |||||| |||| |
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|
| T |
22839051 |
agttccaaccaaatgagtagtgtgaggatcagcaccatgatcatacaaccttgaaagaccaaaatctcccaatctagcatt |
22839131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 91 - 265
Target Start/End: Original strand, 22829930 - 22830104
Alignment:
| Q |
91 |
taccacaaactacctcaagtaaaaatgcaccaaatgaatacacatcagaacttgttgtagctttacctgttcttgtatgttcaggtgctaaataaccaag |
190 |
Q |
| |
|
|||||||||| |||||||| | |||||||||||| ||| ||||||||||| | ||||||| ||||||||||| |||||||||| || | |||||||| |
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| T |
22829930 |
taccacaaacaacctcaagaagaaatgcaccaaaagaaaacacatcagaaaattttgtagccttacctgttctaatatgttcaggagcaagataaccaat |
22830029 |
T |
|
| Q |
191 |
tgttccaacaacatgtgtagtttgaggatctgttccatgatcatataatcttgatagaccaaaatcacctaatct |
265 |
Q |
| |
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|||||| | | ||| || || |||||||||| || |||||||| || ||||| ||||||||||| || ||||| |
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| T |
22830030 |
agttccagccaaatgagttgtgtgaggatctgcaccgtgatcatacaaccttgaaagaccaaaatctcccaatct |
22830104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 92 - 256
Target Start/End: Original strand, 22808520 - 22808684
Alignment:
| Q |
92 |
accacaaactacctcaagtaaaaatgcaccaaatgaatacacatcagaacttgttgtagctttacctgttcttgtatgttcaggtgctaaataaccaagt |
191 |
Q |
| |
|
||||||||| |||||||| | |||||||||||| ||| ||||||||||| | | ||||| ||||||||||| |||| ||||| || | |||||||| |
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| T |
22808520 |
accacaaacaacctcaagaagaaatgcaccaaaagaaaacacatcagaaaatttagtagccttacctgttctaatatgctcaggggcaagataaccaata |
22808619 |
T |
|
| Q |
192 |
gttccaacaacatgtgtagtttgaggatctgttccatgatcatataatcttgatagaccaaaatc |
256 |
Q |
| |
|
|||||||| | ||| || || |||||||||| ||||| ||||| || ||||| ||||||||||| |
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| T |
22808620 |
gttccaaccaaatgagttgtgtgaggatctgcaccatggtcatacaaccttgaaagaccaaaatc |
22808684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 80 - 271
Target Start/End: Original strand, 22813915 - 22814106
Alignment:
| Q |
80 |
aataggtcttttaccacaaactacctcaagtaaaaatgcaccaaatgaatacacatcagaacttgttgtagctttacctgttcttgtatgttcaggtgct |
179 |
Q |
| |
|
|||||| ||| |||||||| | |||||||| | |||||||||||| ||| ||| ||||||| | | || || ||||||||||| |||||||||| || |
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|
| T |
22813915 |
aataggccttctaccacaagcaacctcaagaagaaatgcaccaaaagaaaacatatcagaaaatttagtggccttacctgttctaatatgttcaggagca |
22814014 |
T |
|
| Q |
180 |
aaataaccaagtgttccaacaacatgtgtagtttgaggatctgttccatgatcatataatcttgatagaccaaaatcacctaatctaccatt |
271 |
Q |
| |
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| |||||||| ||||||| | | ||| || || |||||||||| ||||| ||||| || ||||| ||||||||||| || |||||| |||| |
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| T |
22814015 |
agataaccaattgttccagccaaatgagttgtgtgaggatctgcaccatggtcatacaaccttgaaagaccaaaatctcccaatctagcatt |
22814106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 91 - 271
Target Start/End: Original strand, 22888197 - 22888377
Alignment:
| Q |
91 |
taccacaaactacctcaagtaaaaatgcaccaaatgaatacacatcagaacttgttgtagctttacctgttcttgtatgttcaggtgctaaataaccaag |
190 |
Q |
| |
|
|||||||||| |||||||| | |||||||||||| ||| ||||||||||| | | ||||| |||||| |||| |||||||||| || | |||||||| |
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|
| T |
22888197 |
taccacaaacaacctcaagaagaaatgcaccaaaagaaaacacatcagaaaatttagtagccttacctcttctaatatgttcaggagcaagataaccaat |
22888296 |
T |
|
| Q |
191 |
tgttccaacaacatgtgtagtttgaggatctgttccatgatcatataatcttgatagaccaaaatcacctaatctaccatt |
271 |
Q |
| |
|
|||||| | | ||| || || |||||||| | |||||||||| || ||||| ||||||||||| || |||||| |||| |
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|
| T |
22888297 |
agttccagccaaatgagttgtgtgaggatcagcaccatgatcatgcaaccttgaaagaccaaaatctcccaatctagcatt |
22888377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 80 - 271
Target Start/End: Original strand, 22892841 - 22893032
Alignment:
| Q |
80 |
aataggtcttttaccacaaactacctcaagtaaaaatgcaccaaatgaatacacatcagaacttgttgtagctttacctgttcttgtatgttcaggtgct |
179 |
Q |
| |
|
|||||| ||| |||||||| | |||||||| | |||||||||||| ||| ||||||||||| | | ||||| ||||||||||| ||||||| || || |
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| T |
22892841 |
aataggccttctaccacaagcaacctcaagaagaaatgcaccaaaagaaaacacatcagaaaatttagtagccttacctgttctaatatgttccggagca |
22892940 |
T |
|
| Q |
180 |
aaataaccaagtgttccaacaacatgtgtagtttgaggatctgttccatgatcatataatcttgatagaccaaaatcacctaatctaccatt |
271 |
Q |
| |
|
| |||||||| |||||| | | ||| || || ||| |||||| ||||| ||||| || ||||| ||||||||||| || |||||| |||| |
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|
| T |
22892941 |
agataaccaatagttccagccaaatgagtcgtgtgatgatctgcaccatggtcatacaaccttgaaagaccaaaatctcccaatctagcatt |
22893032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 79 - 271
Target Start/End: Original strand, 22874815 - 22875007
Alignment:
| Q |
79 |
caataggtcttttaccacaaactacctcaagtaaaaatgcaccaaatgaatacacatcagaacttgttgtagctttacctgttcttgtatgttcaggtgc |
178 |
Q |
| |
|
||||||| ||| |||||||| | |||||||| | |||||||||||| ||| ||||||||||| | | ||||| ||||| ||||| ||||||| || || |
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|
| T |
22874815 |
caataggccttctaccacaagcaacctcaagaagaaatgcaccaaaagaaaacacatcagaaaatttagtagccttaccagttctaatatgttccggagc |
22874914 |
T |
|
| Q |
179 |
taaataaccaagtgttccaacaacatgtgtagtttgaggatctgttccatgatcatataatcttgatagaccaaaatcacctaatctaccatt |
271 |
Q |
| |
|
| |||||||| |||||| | | ||| || || |||||||| | |||||||||| || ||||| ||||||||||| || |||||| |||| |
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| T |
22874915 |
aagataaccaatagttccagccaaatgagttgtgtgaggatcagcaccatgatcatgcaaccttgaaagaccaaaatctcccaatctagcatt |
22875007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 91 - 271
Target Start/End: Complemental strand, 21151815 - 21151635
Alignment:
| Q |
91 |
taccacaaactacctcaagtaaaaatgcaccaaatgaatacacatcagaacttgttgtagctttacctgttcttgtatgttcaggtgctaaataaccaag |
190 |
Q |
| |
|
|||||||||| |||||||| | |||||||||||| ||| ||||||||||| | | ||||| ||||||||||| ||||||| || || | |||||||| |
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|
| T |
21151815 |
taccacaaacaacctcaagaagaaatgcaccaaaagaaaacacatcagaagatttagtagccttacctgttctaatatgttccggagcaagataaccaat |
21151716 |
T |
|
| Q |
191 |
tgttccaacaacatgtgtagtttgaggatctgttccatgatcatataatcttgatagaccaaaatcacctaatctaccatt |
271 |
Q |
| |
|
|||||| | | ||| || || |||||||||| ||||||||||| || ||||| ||||||||||| || |||||| |||| |
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|
| T |
21151715 |
agttccagccaaatgagttgtgtgaggatctgcaccatgatcatacaaccttgaaagaccaaaatctcccaatctagcatt |
21151635 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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