View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3526_low_28 (Length: 283)
Name: NF3526_low_28
Description: NF3526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3526_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 10 - 266
Target Start/End: Original strand, 5522615 - 5522871
Alignment:
| Q |
10 |
agatgaagatcatagaaagaaacaaccggagaaagatgaagatcttccattaaaagtactcagtgaaactcaggagaaaccaatgatggagaaaggtatg |
109 |
Q |
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| T |
5522615 |
agatgaagatcatagaaagaaacaaccggagaaagatgaagatcttccattaaaagtactcagtgaaactcaggagaaaccaatgatggagaaaggtatg |
5522714 |
T |
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| Q |
110 |
atttcaatcaccatgctaaaaattgaaaccttgtaatagaaaatgttgataggattaccactcatgaagttctactcagtgaagacaaaccaattaggaa |
209 |
Q |
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| T |
5522715 |
atttcaatcaccatgctaaaaattgaaaccttgtaatagaaaatgttcataggattacaactcatgaagttctactcagtgaagacaaaccaattaggaa |
5522814 |
T |
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| Q |
210 |
aggaaaaatgatttcctttaaagcttttgagagtcaccttgatgtggtcgataattt |
266 |
Q |
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| T |
5522815 |
aggaaaaatgatttcctttaaagcttttgagagtcaccttgatgtggtcgataattt |
5522871 |
T |
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Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 170 - 222
Target Start/End: Complemental strand, 18834207 - 18834155
Alignment:
| Q |
170 |
ctcatgaagttctactcagtgaagacaaaccaattaggaaaggaaaaatgatt |
222 |
Q |
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| T |
18834207 |
ctcatgaagttctgctcattgaagacaaaccaatcatgaaaggcaagatgatt |
18834155 |
T |
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