View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3526_low_3 (Length: 628)
Name: NF3526_low_3
Description: NF3526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3526_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 490; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 19 - 623
Target Start/End: Complemental strand, 46642618 - 46642016
Alignment:
| Q |
19 |
ttatgcctataccagcaacggtattgatgtaaggatcatctagtgacggtgcacaaaagatacctgtgtagttgcatacatttgggccataccagtttaa |
118 |
Q |
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| T |
46642618 |
ttatgtctataccagcaacggtattgatgtaaggatcatctagtgacggtgcacaaatgatacctgtgtagttgcatacatttgggccataccagtttaa |
46642519 |
T |
|
| Q |
119 |
ggtggtgttttttgggtctgaggtgaatgtttgtttccatgcttggagtgctatgtaggctttggtgagtcttgggtttagtggtggtagagattggtgt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
46642518 |
agtggtgttttttgggtctgaggtgaatgtttgtttccatgcttggagtgctatgtaggctttggtgagtcttggatttagtggtggtagagattggtgt |
46642419 |
T |
|
| Q |
219 |
gatgaggggttgatggatatgagaatgacaatgaaggtaattaagaattgtagactataagaggattccattactgataatggatgggtttgattttgtg |
318 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||| || | |||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
46642418 |
gatgaggggttgatggatatgagaatgacaatgaaggaaattaagagttttggactataagaggattccattaccgataatggatgggtttgattttgtg |
46642319 |
T |
|
| Q |
319 |
ttatgggaatgcgaatttatataaatgtgtgtatgttggagaaatattggaagttagtgtttgttgtgctgcaaattgacattactcttataaaataata |
418 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
46642318 |
ttatgggaatgtgaatttatataaatgtgtgtatgttggagaaatattggaagttagtgtttgttgtgctgcaaattgacgttactcttataaaataata |
46642219 |
T |
|
| Q |
419 |
atgtaattggtttggttagacatttaaatggtgtgacatataggttatccataaaagaatggtaggtaattaatcttaacaaatgaaaatattcacattt |
518 |
Q |
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| T |
46642218 |
atgtaattggtttggttagacgtttaaatggtgtgacatctaggttacctataaaagaatagtaggtaatttatactaacgaat--aaatattcacattt |
46642121 |
T |
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| Q |
519 |
ttaggtggtatccttcatggatttcgtgcatgtggatttcctccggtggaaatctctcccatcttctgcagtgacataatttgcaccattaattttcttc |
618 |
Q |
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||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||||||||||||| ||||||||||| ||||| |
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| T |
46642120 |
ttaagtggtatccttcatggatttcgtgcatgtggatttccttcggtggaaatctctccaatcctctgcagtgacataatttacaccattaattatcttc |
46642021 |
T |
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| Q |
619 |
tctct |
623 |
Q |
| |
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||||| |
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| T |
46642020 |
tctct |
46642016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 19 - 446
Target Start/End: Complemental strand, 46640326 - 46639893
Alignment:
| Q |
19 |
ttatgcctataccagcaacggtattgatgtaaggatcatctagtgacggtgcacaaaagatacctgtgtagttgcatacatttgggccataccagtttaa |
118 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46640326 |
ttatgtctataccagcaacggtattgatgtaaggatcatctagtgacggtgcacaaaagatacctgtgtagttgcatacatttgggccataccagtttaa |
46640227 |
T |
|
| Q |
119 |
ggtggtgttttttgggtctgaggtgaatgtttgtttccatgcttggagtgctatgtaggctttggtgagtcttgggtttagtggtggtagagattggtgt |
218 |
Q |
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| T |
46640226 |
ggtggtgttttttgggtctgaggtgaatgtttgtttccatgcttggagtgctatgtaggctttggtgagtcttgggtttagtggtggtagagattggtgt |
46640127 |
T |
|
| Q |
219 |
gatgaggggttgatggatatgagaatgacaatgaaggtaattaagaattgtagactataagaggattccattactgataatggatgggtttgattttgtg |
318 |
Q |
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| T |
46640126 |
gatgaggggttgatggatatgagaatgacaatgaaggtaattaagaattgtagactataagaggattccattactgataatggatgggtttgattttgtg |
46640027 |
T |
|
| Q |
319 |
ttatgggaatgcgaatttatataa---atgtgtgtatgttggagaaatattggaagttagtgtttgttgtgctgcaaattgacattactcttataaaata |
415 |
Q |
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| T |
46640026 |
ttatgggaatgtgaatttatataaggggtgtgtgtatgttggagaaattttggaagtttctgtttgttgtgctgcaaattgacattactcttataaaata |
46639927 |
T |
|
| Q |
416 |
ataat---gtaattggtttggttagacatttaaa |
446 |
Q |
| |
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||||| || ||||||||||||||||||||||| |
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| T |
46639926 |
ataatagagtgattggtttggttagacatttaaa |
46639893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 551 - 621
Target Start/End: Complemental strand, 29966171 - 29966101
Alignment:
| Q |
551 |
tggatttcctccggtggaaatctctcccatcttctgcagtgacataatttgcaccattaattttcttctct |
621 |
Q |
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| T |
29966171 |
tggatttcctcctgtgaaaatctctccagttttctgcagtgatacaatctgcaccattaattgtcttctct |
29966101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 551 - 621
Target Start/End: Original strand, 30008627 - 30008697
Alignment:
| Q |
551 |
tggatttcctccggtggaaatctctcccatcttctgcagtgacataatttgcaccattaattttcttctct |
621 |
Q |
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|||||||||||| ||| |||||||||| | ||||||||||| | ||| ||||||||||||| |||||||| |
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| T |
30008627 |
tggatttcctcctgtgaaaatctctccagttttctgcagtgatacaatctgcaccattaattgtcttctct |
30008697 |
T |
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