View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3526_low_31 (Length: 267)

Name: NF3526_low_31
Description: NF3526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3526_low_31
NF3526_low_31
[»] chr1 (8 HSPs)
chr1 (1-249)||(35371464-35371713)
chr1 (46-176)||(21620278-21620410)
chr1 (46-176)||(19565403-19565534)
chr1 (46-176)||(25473665-25473797)
chr1 (46-176)||(32550220-32550352)
chr1 (47-176)||(3656740-3656871)
chr1 (47-176)||(6693873-6694004)
chr1 (96-176)||(14236666-14236747)
[»] chr3 (9 HSPs)
chr3 (1-174)||(54162701-54162876)
chr3 (46-176)||(30260912-30261044)
chr3 (96-176)||(41296006-41296087)
chr3 (50-176)||(24373295-24373423)
chr3 (96-181)||(3777545-3777631)
chr3 (46-174)||(41958214-41958344)
chr3 (96-176)||(45572929-45573010)
chr3 (96-176)||(53151374-53151455)
chr3 (46-176)||(8082183-8082315)
[»] chr4 (5 HSPs)
chr4 (46-177)||(127793-127926)
chr4 (2-45)||(1581846-1581889)
chr4 (47-176)||(29051795-29051926)
chr4 (46-175)||(24072613-24072744)
chr4 (46-125)||(37995687-37995766)
[»] chr5 (9 HSPs)
chr5 (45-176)||(25897758-25897891)
chr5 (46-173)||(36275738-36275866)
chr5 (46-176)||(42393867-42393999)
chr5 (46-176)||(26674278-26674410)
chr5 (46-176)||(26945884-26946016)
chr5 (48-125)||(11742046-11742124)
chr5 (46-176)||(30493732-30493864)
chr5 (46-176)||(30534075-30534207)
chr5 (96-176)||(42644842-42644923)
[»] chr8 (6 HSPs)
chr8 (46-176)||(11661141-11661273)
chr8 (46-176)||(9686566-9686698)
chr8 (46-176)||(1197390-1197522)
chr8 (46-176)||(2735073-2735205)
chr8 (46-176)||(18915982-18916114)
chr8 (50-176)||(38566998-38567126)
[»] chr7 (6 HSPs)
chr7 (79-173)||(41743377-41743472)
chr7 (46-176)||(49141797-49141929)
chr7 (47-176)||(30586284-30586415)
chr7 (5-53)||(8047826-8047874)
chr7 (46-176)||(20372278-20372410)
chr7 (48-174)||(22916519-22916647)
[»] scaffold0051 (1 HSPs)
scaffold0051 (46-176)||(59241-59373)
[»] chr2 (4 HSPs)
chr2 (46-176)||(5614376-5614508)
chr2 (46-174)||(15805595-15805725)
chr2 (96-184)||(27641313-27641402)
chr2 (46-176)||(32597592-32597724)


Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 35371713 - 35371464
Alignment:
Q  1 gatttcatgggaatgcacattcccaccttctcacatggaaataaaggaagttacttcattcctatgaacgtctatactcaggaatatattttcaaaacct 100  Q
    |||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||    
T  35371713 gatttcatgggaatgcacattcccactttctcacatgggaataaaggaaggtacttcattcccaggaacgtctatactcaggaatatattttcaaaacct 35371614  T
Q  101 tataacaaacatgtgtataatcattttctagc-atgtattttcaggaatgtcatctctaaacttgaaacaaacaccctctatatattaattcattcaaat 199  Q
    ||||||||||||| ||||||||||| |||||| |||||||| || ||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  35371613 tataacaaacatgggtataatcattctctagccatgtatttccaagaatgtcatctttaaacttgaaacaaacaccctctatatattaattcattcaaat 35371514  T
Q  200 tgtgaacaaatcttctctccttctactgtccagatcctctcgtctcccac 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35371513 tgtgaacaaatcttctctccttctactgtccagatcctctcgtctcccac 35371464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 176
Target Start/End: Original strand, 21620278 - 21620410
Alignment:
Q  46 ggaagttacttcattcctatgaacgtctatactcaggaata-tattttcaaaaccttataacaaacatgtgtataatcattttct-agcatgtattttca 143  Q
    ||||||||||  ||||||| |||| | |||||||||||||| | |||||  ||||| |||||||||||| |||||||||||| || | ||||||||  |     
T  21620278 ggaagttactctattcctaggaacctttatactcaggaatatttttttctcaacctcataacaaacatgggtataatcatttcctaaccatgtattcccg 21620377  T
Q  144 ggaatgtcatctctaaacttgaaacaaacaccc 176  Q
    ||||||||||   ||| ||||||||||||||||    
T  21620378 ggaatgtcattcttaaccttgaaacaaacaccc 21620410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 176
Target Start/End: Original strand, 19565403 - 19565534
Alignment:
Q  46 ggaagttacttcattcctatgaacgtctatactcaggaatatattttcaaaaccttataacaaacatgtgtataatcattttctag-catgtattttcag 144  Q
    ||||||||||  ||||| | |||| | ||| | ||||||||| |||||  ||||| |||||||||||| |||||||||||| |||| ||||||||  | |    
T  19565403 ggaagttactctattcccacgaacctttatgcccaggaatattttttctcaacctcataacaaacatgggtataatcatttcctagccatgtattcccgg 19565502  T
Q  145 gaatgtcatctctaaacttgaaacaaacaccc 176  Q
    |||||||||   ||| ||||||||||||||||    
T  19565503 gaatgtcattcttaaccttgaaacaaacaccc 19565534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 46 - 176
Target Start/End: Complemental strand, 25473797 - 25473665
Alignment:
Q  46 ggaagttacttcattcctatgaacgtctatactcaggaatatatttt-caaaaccttataacaaacatgtgtataatcattttctagc-atgtattttca 143  Q
    |||||||||| |||||| | |||| | ||||| ||||||||| |||| |  ||||| |||||||||||| |||||||||||  ||||| |||||||  |     
T  25473797 ggaagttactccattcccaggaacctttatacccaggaatatttttttctcaacctcataacaaacatgggtataatcattccctagctatgtattcccg 25473698  T
Q  144 ggaatgtcatctctaaacttgaaacaaacaccc 176  Q
    ||||||||||   ||| ||||||||||||||||    
T  25473697 ggaatgtcattcttaaccttgaaacaaacaccc 25473665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 46 - 176
Target Start/End: Complemental strand, 32550352 - 32550220
Alignment:
Q  46 ggaagttacttcattcctatgaacgtctatactcaggaatatatttt-caaaaccttataacaaacatgtgtataatcattttctagc-atgtattttca 143  Q
    |||||||||| |||||| | |||| | ||||| ||||||||| |||| |  ||||| |||| ||||||| |||||||||||  ||||| |||||||| ||    
T  32550352 ggaagttactccattcccaggaacctttatacccaggaatatttttttctcaacctcataataaacatgggtataatcattccctagccatgtatttcca 32550253  T
Q  144 ggaatgtcatctctaaacttgaaacaaacaccc 176  Q
    ||||||||||   ||| ||| ||||||||||||    
T  32550252 ggaatgtcattcttaacctttaaacaaacaccc 32550220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 176
Target Start/End: Original strand, 3656740 - 3656871
Alignment:
Q  47 gaagttacttcattcctatgaacgtctatactcaggaatatatttt-caaaaccttataacaaacatgtgtataatcattttctagc-atgtattttcag 144  Q
    ||||||||| |||||| |||||| | ||||| ||||||||| |||| |  ||||| |||||||||||  |||||||||||  ||||| |||||||  | |    
T  3656740 gaagttactccattcccatgaacctttatacccaggaatatttttttctcaacctcataacaaacattggtataatcattccctagctatgtattcccgg 3656839  T
Q  145 gaatgtcatctctaaacttgaaacaaacaccc 176  Q
    |||||||||   ||| ||||||||||||||||    
T  3656840 gaatgtcattcttaaccttgaaacaaacaccc 3656871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 176
Target Start/End: Complemental strand, 6694004 - 6693873
Alignment:
Q  47 gaagttacttcattcctatgaacgtctatactcaggaatatatttt-caaaaccttataacaaacatgtgtataatcattttctag-catgtattttcag 144  Q
    |||||||||||||||  |||||  | |||||  |||||||| |||| || ||||| |||||||||||| |||||||||||  |||| ||||||||    |    
T  6694004 gaagttacttcattcacatgaatttttatacctaggaatatttttttcacaacctcataacaaacatgagtataatcattccctagtcatgtattcgtgg 6693905  T
Q  145 gaatgtcatctctaaacttgaaacaaacaccc 176  Q
    |||||||||   ||| ||||||||||||||||    
T  6693904 gaatgtcattcttaaccttgaaacaaacaccc 6693873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 96 - 176
Target Start/End: Original strand, 14236666 - 14236747
Alignment:
Q  96 aaccttataacaaacatgtgtataatcattttctag-catgtattttcaggaatgtcatctctaaacttgaaacaaacaccc 176  Q
    ||||| |||||||||||| |||||||||||  |||| ||||||||  | ||||||||||   ||| ||||||||||||||||    
T  14236666 aacctcataacaaacatgggtataatcattccctagccatgtattcccgggaatgtcattcttaaccttgaaacaaacaccc 14236747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 5e-28; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 54162876 - 54162701
Alignment:
Q  1 gatttcatgggaatgcacattcccaccttctcacatggaaataaaggaagttacttcattcctatgaacgtctatactcaggaata-tattttcaaaacc 99  Q
    ||||||||||||||||||||||||| ||| |||||||| ||||| ||||||||||||||||| | |||| | | |||  ||||||| | |||||   |||    
T  54162876 gatttcatgggaatgcacattcccatcttttcacatgggaataagggaagttacttcattcccaggaacctttgtacctaggaatatttttttctcgacc 54162777  T
Q  100 ttataacaaacatgtgtataatcattttct-agcatgtattttcaggaatgtcatctctaaacttgaaacaaacac 174  Q
    |||||||||||||| |||||||||||  || | |||| |||  |||||||||||| | ||||||||||||||||||    
T  54162776 ttataacaaacatgggtataatcattccctaaccatggattcccaggaatgtcatttttaaacttgaaacaaacac 54162701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 46 - 176
Target Start/End: Original strand, 30260912 - 30261044
Alignment:
Q  46 ggaagttacttcattcctatgaacgtctatactcaggaatatatttt-caaaaccttataacaaacatgtgtataatcattttctagc-atgtattttca 143  Q
    |||||||||| |||||| | |||| | ||||| ||||||||| |||| |  ||||| |||||||||||| |||||||||||  ||||| |||||||| ||    
T  30260912 ggaagttactccattcccaggaacctttatacccaggaatatttttttctcaacctcataacaaacatgggtataatcattccctagccatgtatttcca 30261011  T
Q  144 ggaatgtcatctctaaacttgaaacaaacaccc 176  Q
    ||||||||||   ||| ||||||||||||||||    
T  30261012 ggaatgtcattcttaaccttgaaacaaacaccc 30261044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 96 - 176
Target Start/End: Original strand, 41296006 - 41296087
Alignment:
Q  96 aaccttataacaaacatgtgtataatcattttctag-catgtattttcaggaatgtcatctctaaacttgaaacaaacaccc 176  Q
    |||||||||||||||||| ||||||||||| ||||| ||||||||| || ||||||||| | ||||| |||||||| |||||    
T  41296006 aaccttataacaaacatgagtataatcattctctagtcatgtatttccaagaatgtcatttttaaacatgaaacaatcaccc 41296087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 50 - 176
Target Start/End: Original strand, 24373295 - 24373423
Alignment:
Q  50 gttacttcattcctatgaacgtctatactcaggaatatatttt-caaaaccttataacaaacatgtgtataatcattttctag-catgtattttcaggaa 147  Q
    |||||| |||||| | |||| | ||||| ||||||||| |||| |  ||||| |||||||||||| |||||||||||  |||| ||||||||  | ||||    
T  24373295 gttactccattcccaggaacctttatacccaggaatatttttttctcaacctcataacaaacatgggtataatcattccctagccatgtattcccgggaa 24373394  T
Q  148 tgtcatctctaaacttgaaacaaacaccc 176  Q
    ||||||   ||| ||||||||||||||||    
T  24373395 tgtcattcttaaccttgaaacaaacaccc 24373423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 181
Target Start/End: Original strand, 3777545 - 3777631
Alignment:
Q  96 aaccttataacaaacatgtgtataatcattttctag-catgtattttcaggaatgtcatctctaaacttgaaacaaacaccctctat 181  Q
    ||||| |||||||||||| |||||||||||  |||| |||||||| || | ||||||||   ||| |||||||||||||||| ||||    
T  3777545 aacctcataacaaacatgggtataatcattccctagccatgtattctcggaaatgtcattcttaaccttgaaacaaacaccccctat 3777631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 174
Target Start/End: Original strand, 41958214 - 41958344
Alignment:
Q  46 ggaagttacttcattcctatgaacgtctatactcaggaatatatttt-caaaaccttataacaaacatgtgtataatcattttctag-catgtattttca 143  Q
    |||||||||| |||||| | |||| | ||||| ||||||||| |||| |  ||||| ||||||||||||  ||||||||||  |||| ||||||||  |     
T  41958214 ggaagttactccattcccaggaacctttatacccaggaatatttttttctcaacctcataacaaacatggatataatcattccctagccatgtattcccg 41958313  T
Q  144 ggaatgtcatctctaaacttgaaacaaacac 174  Q
    ||||||||||   ||| ||||||||||||||    
T  41958314 ggaatgtcattcttaaccttgaaacaaacac 41958344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 96 - 176
Target Start/End: Original strand, 45572929 - 45573010
Alignment:
Q  96 aaccttataacaaacatgtgtataatcattttctag-catgtattttcaggaatgtcatctctaaacttgaaacaaacaccc 176  Q
    ||||| |||||||||||| |||||||||||  |||| ||||||||  | ||||||||||   ||| ||||||||||||||||    
T  45572929 aacctcataacaaacatgggtataatcattccctagccatgtattcccgggaatgtcattcttaaccttgaaacaaacaccc 45573010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 96 - 176
Target Start/End: Complemental strand, 53151455 - 53151374
Alignment:
Q  96 aaccttataacaaacatgtgtataatcattttctag-catgtattttcaggaatgtcatctctaaacttgaaacaaacaccc 176  Q
    ||||| |||||||||||| |||||||||||  |||| ||||||||  | ||||||||||   ||| ||||||||||||||||    
T  53151455 aacctgataacaaacatgggtataatcattccctagccatgtattcccgggaatgtcattcttaaccttgaaacaaacaccc 53151374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 176
Target Start/End: Complemental strand, 8082315 - 8082183
Alignment:
Q  46 ggaagttacttcattcctatgaacgtctatactcaggaatatatttt-caaaaccttataacaaacatgtgtataatcattttctagc-atgtattttca 143  Q
    |||||||||| |||||| | |||| | ||||| ||||||||| |||| |  ||||| |||||||| |||  ||||||||||  ||||| |||||||  |     
T  8082315 ggaagttactccattcccaggaacctttatacccaggaatatttttttctcaacctcataacaaaaatggatataatcattccctagccatgtattcccg 8082216  T
Q  144 ggaatgtcatctctaaacttgaaacaaacaccc 176  Q
    ||||||||||   ||| ||||||||||||||||    
T  8082215 ggaatgtcattcttaaccttgaaacaaacaccc 8082183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 46 - 177
Target Start/End: Complemental strand, 127926 - 127793
Alignment:
Q  46 ggaagttacttcattcctatgaacgtctatactcaggaata-tattttcaaaaccttataacaaacatgtgtataatcattttctagc-atgtattttca 143  Q
    ||||||||||||||||| |||||| | |||||||||||||| | |||||  ||||| |||||||||||| |||||||||||  ||||| |||||||  |     
T  127926 ggaagttacttcattcccatgaacctttatactcaggaatatttttttctcaacctcataacaaacatgagtataatcattccctagctatgtattcccg 127827  T
Q  144 ggaatgtcatctctaaacttgaaacaaacaccct 177  Q
    ||||||||||   ||| |||||||||||||||||    
T  127826 ggaatgtcattcttaaccttgaaacaaacaccct 127793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 45
Target Start/End: Complemental strand, 1581889 - 1581846
Alignment:
Q  2 atttcatgggaatgcacattcccaccttctcacatggaaataaa 45  Q
    |||||||| |||||||||||| ||||||||||||||||||||||    
T  1581889 atttcatgagaatgcacattctcaccttctcacatggaaataaa 1581846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 47 - 176
Target Start/End: Complemental strand, 29051926 - 29051795
Alignment:
Q  47 gaagttacttcattcctatgaacgtctatactcaggaatatatttt-caaaaccttataacaaacatgtgtataatcattttctag-catgtattttcag 144  Q
    ||||||||| |||||| |||||| | ||||| ||||||||| |||| |  ||||| |||||||| ||| |||||||||||  |||| ||||||||  | |    
T  29051926 gaagttactccattcccatgaacttttatacccaggaatatttttttctcaacctcataacaaatatgggtataatcattccctagccatgtattcccgg 29051827  T
Q  145 gaatgtcatctctaaacttgaaacaaacaccc 176  Q
    |||||||||   ||| ||||||||||||||||    
T  29051826 gaatgtcattcttaaccttgaaacaaacaccc 29051795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 175
Target Start/End: Original strand, 24072613 - 24072744
Alignment:
Q  46 ggaagttacttcattcctatgaacgtctatactcaggaatatatttt-caaaaccttataacaaacatgtgtataatcattttctag-catgtattttca 143  Q
    |||||||||| |||||| | |||| | ||||| ||||||||| |||| |  ||||| |||||||||||| |||||||||||  |||| ||||||||  |     
T  24072613 ggaagttactccattcccaggaacctttatacccaggaatatttttttctcaacctcataacaaacatgggtataatcattccctagccatgtattcccg 24072712  T
Q  144 ggaatgtcatctctaaacttgaaacaaacacc 175  Q
    ||||| ||||   ||| |||||||||||||||    
T  24072713 ggaatatcattcttaaccttgaaacaaacacc 24072744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 46 - 125
Target Start/End: Original strand, 37995687 - 37995766
Alignment:
Q  46 ggaagttacttcattcctatgaacgtctatactcaggaatatattttcaaaaccttataacaaacatgtgtataatcatt 125  Q
    |||||||||| |||||| | |||| | ||||| || |||||| |||||  ||||| |||||||||||| |||||||||||    
T  37995687 ggaagttactccattccaaggaacctttatacccatgaatattttttctcaacctcataacaaacatgggtataatcatt 37995766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 45 - 176
Target Start/End: Complemental strand, 25897891 - 25897758
Alignment:
Q  45 aggaagttacttcattcctatgaacgtctatactcaggaata-tattttcaaaaccttataacaaacatgtgtataatcattttctag-catgtattttc 142  Q
    ||||||||||| |||||||| |||| | ||||| |||||||| | |||||  ||||| |||||||||||| |||||||||||  |||| ||||||||  |    
T  25897891 aggaagttactccattcctaggaacctttatacccaggaatatttttttctcaacctcataacaaacatgggtataatcattccctagccatgtattccc 25897792  T
Q  143 aggaatgtcatctctaaacttgaaacaaacaccc 176  Q
     ||||||||||   ||| ||||||||||||||||    
T  25897791 gggaatgtcattcttaaccttgaaacaaacaccc 25897758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 46 - 173
Target Start/End: Original strand, 36275738 - 36275866
Alignment:
Q  46 ggaagttacttcattcctatgaacgtctatactcaggaatatattttcaaaaccttataacaaacatgtgtataatcattttctagc-atgtattttcag 144  Q
    |||||||||| |||||| | |||| | ||||| ||||||||| |||||  ||||| ||||||||||||||||||||||||  ||||| ||||| ||||||    
T  36275738 ggaagttactccattccgaggaacctttatacccaggaatattttttctcaacctcataacaaacatgtgtataatcattccctagctatgta-tttcag 36275836  T
Q  145 g-aatgtcatctctaaacttgaaacaaaca 173  Q
    | ||||||||   ||| |||||||||||||    
T  36275837 gaaatgtcattcttaaccttgaaacaaaca 36275866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 176
Target Start/End: Complemental strand, 42393999 - 42393867
Alignment:
Q  46 ggaagttacttcattcctatgaacgtctatactcaggaata-tattttcaaaaccttataacaaacatgtgtataatcattttctag-catgtattttca 143  Q
    ||||||||||| ||||| | |||| | |||||||||||||| | |||||  ||||| |||| ||||||| |||||||||||  |||| |||||||| ||     
T  42393999 ggaagttacttaattcccaggaacctttatactcaggaatatttttttctcaacctcataataaacatgggtataatcattccctagccatgtattctcg 42393900  T
Q  144 ggaatgtcatctctaaacttgaaacaaacaccc 176  Q
    ||||||||||   ||| ||||||||||||||||    
T  42393899 ggaatgtcattcttaaccttgaaacaaacaccc 42393867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 46 - 176
Target Start/End: Original strand, 26674278 - 26674410
Alignment:
Q  46 ggaagttacttcattcctatgaacgtctatactcaggaatatatttt-caaaaccttataacaaacatgtgtataatcattttctag-catgtattttca 143  Q
    |||||||||| |||||||| |||| | ||||| ||||||||| |||| |  || || |||||||||||| |||||||||||  |||| ||||||||  |     
T  26674278 ggaagttactccattcctaggaacctttatacccaggaatatttttttctcaatctcataacaaacatgggtataatcattccctagccatgtattcccg 26674377  T
Q  144 ggaatgtcatctctaaacttgaaacaaacaccc 176  Q
    ||||||||||   ||| ||||||||||||||||    
T  26674378 ggaatgtcattcttaaccttgaaacaaacaccc 26674410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 46 - 176
Target Start/End: Original strand, 26945884 - 26946016
Alignment:
Q  46 ggaagttacttcattcctatgaacgtctatactcaggaatatatttt-caaaaccttataacaaacatgtgtataatcattttctag-catgtattttca 143  Q
    |||||||||| |||||||| |||| | ||||| ||||||||| |||| |  || || |||||||||||| |||||||||||  |||| ||||||||  |     
T  26945884 ggaagttactccattcctaggaacctttatacccaggaatatttttttctcaatctcataacaaacatgggtataatcattccctagccatgtattcccg 26945983  T
Q  144 ggaatgtcatctctaaacttgaaacaaacaccc 176  Q
    ||||||||||   ||| ||||||||||||||||    
T  26945984 ggaatgtcattcttaaccttgaaacaaacaccc 26946016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 48 - 125
Target Start/End: Original strand, 11742046 - 11742124
Alignment:
Q  48 aagttacttcattcctatgaa-cgtctatactcaggaatatattttcaaaaccttataacaaacatgtgtataatcatt 125  Q
    ||||||||||||||| ||||| | | ||||| ||||||||| |||||  ||||| |||||||||||| |||||||||||    
T  11742046 aagttacttcattcccatgaatcttttatacccaggaatattttttctcaacctcataacaaacatgggtataatcatt 11742124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 176
Target Start/End: Complemental strand, 30493864 - 30493732
Alignment:
Q  46 ggaagttacttcattcctatgaacgtctatactcaggaatatatttt-caaaaccttataacaaacatgtgtataatcattttctag-catgtattttca 143  Q
    |||||||||| |||||| | |||  | ||||| ||||||||| |||| |  ||||| |||||||||||| |||||||||||  |||| ||||||||  |     
T  30493864 ggaagttactccattcccaggaatctttatacccaggaatatttttttctcaacctcataacaaacatgggtataatcattccctagccatgtattcccg 30493765  T
Q  144 ggaatgtcatctctaaacttgaaacaaacaccc 176  Q
    ||||||||||   ||| ||||||||||||||||    
T  30493764 ggaatgtcattcttaaccttgaaacaaacaccc 30493732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 176
Target Start/End: Complemental strand, 30534207 - 30534075
Alignment:
Q  46 ggaagttacttcattcctatgaacgtctatactcaggaatatatttt-caaaaccttataacaaacatgtgtataatcattttctag-catgtattttca 143  Q
    |||||||||| |||||| | |||  | ||||| ||||||||| |||| |  ||||| |||||||||||| |||||||||||  |||| ||||||||  |     
T  30534207 ggaagttactccattcccaggaatctttatacccaggaatatttttttctcaacctcataacaaacatgggtataatcattccctagccatgtattcccg 30534108  T
Q  144 ggaatgtcatctctaaacttgaaacaaacaccc 176  Q
    ||||||||||   ||| ||||||||||||||||    
T  30534107 ggaatgtcattcttaaccttgaaacaaacaccc 30534075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 96 - 176
Target Start/End: Complemental strand, 42644923 - 42644842
Alignment:
Q  96 aaccttataacaaacatgtgtataatcattttctagc-atgtattttcaggaatgtcatctctaaacttgaaacaaacaccc 176  Q
    ||||| |||| ||||||| ||||||||||| |||| | ||||||| ||| |||||||||   ||||||| ||||||||||||    
T  42644923 aacctcataataaacatgggtataatcattctctacccatgtattctcaagaatgtcattcttaaacttaaaacaaacaccc 42644842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 46 - 176
Target Start/End: Complemental strand, 11661273 - 11661141
Alignment:
Q  46 ggaagttacttcattcctatgaacgtctatactcaggaatatatttt-caaaaccttataacaaacatgtgtataatcattttctag-catgtattttca 143  Q
    |||||||||| |||||| | |||| | ||||| ||||||||| |||| |  ||||| |||||||||||| |||||||||||  |||| ||||||||| |     
T  11661273 ggaagttactccattcccaggaacctttatacccaggaatatttttttctcaacctcataacaaacatgggtataatcattccctagccatgtatttccg 11661174  T
Q  144 ggaatgtcatctctaaacttgaaacaaacaccc 176  Q
    ||||||||||   ||| ||||||||||||||||    
T  11661173 ggaatgtcattcttaaccttgaaacaaacaccc 11661141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 46 - 176
Target Start/End: Original strand, 9686566 - 9686698
Alignment:
Q  46 ggaagttacttcattcctatgaacgtctatactcaggaatatatttt-caaaaccttataacaaacatgtgtataatcattttctagc-atgtattttca 143  Q
    |||||||||| |||||| | |||| | |||||||| |||||| |||| |  ||||| |||||||||||| ||||||| |||  ||||| |||||||| |     
T  9686566 ggaagttactccattcccaggaacctttatactcaagaatatttttttctcaacctcataacaaacatgggtataattattccctagccatgtatttccg 9686665  T
Q  144 ggaatgtcatctctaaacttgaaacaaacaccc 176  Q
    ||||||||||   ||| ||||||||||||||||    
T  9686666 ggaatgtcattcttaaccttgaaacaaacaccc 9686698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 176
Target Start/End: Complemental strand, 1197522 - 1197390
Alignment:
Q  46 ggaagttacttcattcctatgaacgtctatactcaggaatatatttt-caaaaccttataacaaacatgtgtataatcattttctag-catgtattttca 143  Q
    |||||||||| |||||| | |||| | ||||| ||||||||| |||| |  ||||| ||||||||||||  ||||||||||  |||| ||||||||  ||    
T  1197522 ggaagttactccattcccaagaacctttatacccaggaatatttttttctcaacctcataacaaacatggatataatcattccctagccatgtattccca 1197423  T
Q  144 ggaatgtcatctctaaacttgaaacaaacaccc 176  Q
    ||||||||||   | | ||||||||||||||||    
T  1197422 ggaatgtcattcttcaccttgaaacaaacaccc 1197390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 176
Target Start/End: Original strand, 2735073 - 2735205
Alignment:
Q  46 ggaagttacttcattcctatgaacgtctatactcaggaatatatttt-caaaaccttataacaaacatgtgtataatcattttctag-catgtattttca 143  Q
    ||||||||||  ||||| | |||| | ||||| ||||||||| |||| |  ||||| |||||||||||| |||||||||||  |||| ||||||||        
T  2735073 ggaagttactcaattcccaggaacctttatacccaggaatatttttttctcaacctcataacaaacatgggtataatcattccctagccatgtattcctg 2735172  T
Q  144 ggaatgtcatctctaaacttgaaacaaacaccc 176  Q
    ||||||||||   ||| ||||||||||||||||    
T  2735173 ggaatgtcattcttaaccttgaaacaaacaccc 2735205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 176
Target Start/End: Complemental strand, 18916114 - 18915982
Alignment:
Q  46 ggaagttacttcattcctatgaacgtctatactcaggaatatatttt-caaaaccttataacaaacatgtgtataatcattttctag-catgtattttca 143  Q
    |||||||||| |||||| | |||| | ||||| ||| ||||| |||| |  ||||| |||||||||||| |||||||||||  |||| ||||||||  |     
T  18916114 ggaagttactccattcccaggaacctttatacccagaaatatttttttctcaacctcataacaaacatgggtataatcattccctagccatgtattcccg 18916015  T
Q  144 ggaatgtcatctctaaacttgaaacaaacaccc 176  Q
    | ||||||||   ||| ||||||||||||||||    
T  18916014 gaaatgtcattcttaaccttgaaacaaacaccc 18915982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 176
Target Start/End: Complemental strand, 38567126 - 38566998
Alignment:
Q  50 gttacttcattcctatgaacgtctatactcaggaatatatttt-caaaaccttataacaaacatgtgtataatcattttctagc-atgtattttcaggaa 147  Q
    |||||| |||||| | |||| | ||||| ||||||||| |||| |  ||||| ||||||||||||  |||||||||   ||||| |||||||| | ||||    
T  38567126 gttactccattcccaggaacctttatacccaggaatatttttttctcaacctcataacaaacatggatataatcatcccctagccatgtatttccgggaa 38567027  T
Q  148 tgtcatctctaaacttgaaacaaacaccc 176  Q
    ||||||   ||| ||||||||||||||||    
T  38567026 tgtcattcttaaccttgaaacaaacaccc 38566998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 79 - 173
Target Start/End: Original strand, 41743377 - 41743472
Alignment:
Q  79 caggaatatattttcaaaaccttataacaaacatgtgtataatcattttctag-catgtattttcaggaatgtcatctctaaacttgaaacaaaca 173  Q
    ||||||||| |||||  ||||| ||||||||||||||||||||||||  |||| |||||||| || | ||||||||   ||| |||||||||||||    
T  41743377 caggaatattttttctcaacctcataacaaacatgtgtataatcattccctagccatgtattctcggaaatgtcattcttaaccttgaaacaaaca 41743472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 176
Target Start/End: Complemental strand, 49141929 - 49141797
Alignment:
Q  46 ggaagttacttcattcctatgaacgtctatactcaggaatatatttt-caaaaccttataacaaacatgtgtataatcattttctag-catgtattttca 143  Q
    |||||||||| |||||| | |||| | ||||| ||||||||| |||| |  ||||| |||||||||||| |||||||||||   ||| ||||||||  |     
T  49141929 ggaagttactccattcccaggaacctttatacccaggaatatttttttctcaacctcataacaaacatgggtataatcattccttagccatgtattcccg 49141830  T
Q  144 ggaatgtcatctctaaacttgaaacaaacaccc 176  Q
    ||||||||||   ||| ||||||||||||||||    
T  49141829 ggaatgtcattcttaaccttgaaacaaacaccc 49141797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 47 - 176
Target Start/End: Original strand, 30586284 - 30586415
Alignment:
Q  47 gaagttacttcattcctatgaacgtctatactcaggaatatatttt-caaaaccttataacaaacatgtgtataatcattttctag-catgtattttcag 144  Q
    ||||||||| |||||| | |||| | ||||| ||||||||| |||| |  ||||| |||||||||||| |||||||||||  |||| ||||||||  | |    
T  30586284 gaagttactccattcccaggaacctttatacccaggaatatttttttctcaacctcataacaaacatgggtataatcattccctagtcatgtattcccgg 30586383  T
Q  145 gaatgtcatctctaaacttgaaacaaacaccc 176  Q
     ||||||||   ||| ||||||||||||||||    
T  30586384 aaatgtcattcttaaccttgaaacaaacaccc 30586415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 5 - 53
Target Start/End: Complemental strand, 8047874 - 8047826
Alignment:
Q  5 tcatgggaatgcacattcccaccttctcacatggaaataaaggaagtta 53  Q
    ||||| ||||||||||| |||| |||| |||||| ||||||||||||||    
T  8047874 tcatgtgaatgcacatttccactttcttacatgggaataaaggaagtta 8047826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 176
Target Start/End: Complemental strand, 20372410 - 20372278
Alignment:
Q  46 ggaagttacttcattcctatgaacgtctatactcaggaatatatttt-caaaaccttataacaaacatgtgtataatcattttctag-catgtattttca 143  Q
    ||||||||||  ||||| | |||| | ||||| ||||||||| |||| |  ||||| |||||||||||| |||||||||||  |||| ||||||||  |     
T  20372410 ggaagttactcaattcccaggaacctttatacccaggaatatttttttctcaacctcataacaaacatgggtataatcattccctagccatgtattcccg 20372311  T
Q  144 ggaatgtcatctctaaacttgaaacaaacaccc 176  Q
    |||| |||||   ||| ||||||||||||||||    
T  20372310 ggaaagtcattcttaaccttgaaacaaacaccc 20372278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 174
Target Start/End: Complemental strand, 22916647 - 22916519
Alignment:
Q  48 aagttacttcattcctatgaa-cgtctatactcaggaatatattttcaaaaccttataacaaacatgtgtataatcattttct-agcatgtattttcagg 145  Q
    |||||| |||||||||| ||| | | |||||  |||||||  |||||  ||||| |||||||||||| ||||||||||| ||| | ||||||||  |||     
T  22916647 aagttatttcattcctaggaatcttttatacctaggaataatttttctcaacctcataacaaacatgagtataatcattctctaaccatgtattcccaga 22916548  T
Q  146 aatgtcatctctaaacttgaaacaaacac 174  Q
    ||||||||   ||| ||||||||||||||    
T  22916547 aatgtcattcttaaccttgaaacaaacac 22916519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0051 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 176
Target Start/End: Original strand, 59241 - 59373
Alignment:
Q  46 ggaagttacttcattcctatgaacgtctatactcaggaatatatttt-caaaaccttataacaaacatgtgtataatcattttctag-catgtattttca 143  Q
    |||||||||| |||||| |||||| | || || ||||||||| |||| |  ||||| |||||||||||| ||||||| |||  |||| ||||||||  |     
T  59241 ggaagttactccattcccatgaacctttaaacccaggaatatttttttctcaacctcataacaaacatgggtataataattccctagccatgtattcccg 59340  T
Q  144 ggaatgtcatctctaaacttgaaacaaacaccc 176  Q
    ||||||||||   ||| ||||||||||||||||    
T  59341 ggaatgtcattcttaaccttgaaacaaacaccc 59373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 46 - 176
Target Start/End: Complemental strand, 5614508 - 5614376
Alignment:
Q  46 ggaagttacttcattcctatgaacgtctatactcaggaatatatttt-caaaaccttataacaaacatgtgtataatcattttctag-catgtattttca 143  Q
    |||||||||| |||||| | |||| | ||||| || |||||| |||| |  ||||| |||||||||||| |||||||||||  |||| ||||||||  |     
T  5614508 ggaagttactccattcccaggaacctttatacccaagaatatttttttctcaacctcataacaaacatgggtataatcattccctagccatgtattcccg 5614409  T
Q  144 ggaatgtcatctctaaacttgaaacaaacaccc 176  Q
    ||||||||||   ||| ||||||||||||||||    
T  5614408 ggaatgtcattcttaaccttgaaacaaacaccc 5614376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 46 - 174
Target Start/End: Complemental strand, 15805725 - 15805595
Alignment:
Q  46 ggaagttacttcattcctatgaacgtctatactcaggaatatatttt-caaaaccttataacaaacatgtgtataatcattttctag-catgtattttca 143  Q
    |||||||||| |||||| | |||| | ||||| ||||||||| |||| |  ||||| |||||||||||| |||||||||||  |||| ||||||||  |     
T  15805725 ggaagttactccattcccaggaacctttatacccaggaatatttttttctcaacctcataacaaacatgggtataatcattccctagccatgtattcccg 15805626  T
Q  144 ggaatgtcatctctaaacttgaaacaaacac 174  Q
    | ||||||||   ||| ||||||||||||||    
T  15805625 gaaatgtcattcttaaccttgaaacaaacac 15805595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 96 - 184
Target Start/End: Original strand, 27641313 - 27641402
Alignment:
Q  96 aaccttataacaaacatgtgtataatcattttctag-catgtattttcaggaatgtcatctctaaacttgaaacaaacaccctctatata 184  Q
    ||||| |||||||||||| ||||||| |||  |||| ||||||||  | ||||||||||   ||| |||||||||||||||| |||||||    
T  27641313 aacctcataacaaacatgggtataattattccctagtcatgtattcccgggaatgtcattcttaaccttgaaacaaacaccccctatata 27641402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 46 - 176
Target Start/End: Original strand, 32597592 - 32597724
Alignment:
Q  46 ggaagttacttcattcctatgaacgtctatactcaggaatatatttt-caaaaccttataacaaacatgtgtataatcattttctag-catgtattttca 143  Q
    |||||||||| |||||  | |||| | ||||| ||||||||| |||| |  ||||| |||||||||||| |||||||||||  |||| ||||||||  |     
T  32597592 ggaagttactccattctcaggaacctttatacccaggaatatttttttctcaacctcataacaaacatgggtataatcattccctagccatgtattcccg 32597691  T
Q  144 ggaatgtcatctctaaacttgaaacaaacaccc 176  Q
    | ||||||||   ||| ||||||||||||||||    
T  32597692 gaaatgtcattcttaaccttgaaacaaacaccc 32597724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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