View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3526_low_33 (Length: 251)
Name: NF3526_low_33
Description: NF3526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3526_low_33 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 14 - 236
Target Start/End: Original strand, 52770848 - 52771070
Alignment:
| Q |
14 |
agagaagcacaaataaaaaggcaagcacggttattacagcaagaatcaagaaagtaggaccagtccctaaagcttcagcaacagaaagaaatgtctgaga |
113 |
Q |
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| T |
52770848 |
agagaagcacaaataaaaaggcaagcacggttattacagcaagaatcaagaaagtaggaccagtccctaaagcttcagcaacagaaagaaatgtctgaga |
52770947 |
T |
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| Q |
114 |
cacaatgagattggaaacccaacacacagtagctgacataccaccacaaattcctctatattctttaggatatatctctgagttcattgcccacggcact |
213 |
Q |
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| T |
52770948 |
cacaatgagattggaaacccaacacacagtagctgacataccaccacaaattcctctatattctttaggatatatctctgagttcattgcccacggcact |
52771047 |
T |
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| Q |
214 |
ggtcccatcccaggggagaaaaa |
236 |
Q |
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||||||||||||||||||||||| |
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| T |
52771048 |
ggtcccatcccaggggagaaaaa |
52771070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 51 - 238
Target Start/End: Original strand, 52766921 - 52767108
Alignment:
| Q |
51 |
agcaagaatcaagaaagtaggaccagtccctaaagcttcagcaacagaaagaaatgtctgagacacaatgagattggaaacccaacacacagtagctgac |
150 |
Q |
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| T |
52766921 |
agcaagaagcaagaatgtaggaccagtccctgcagcttctgcaatggaaagaaatgactgagccacaatcaaatttgaaatccaattcacagtagctgac |
52767020 |
T |
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| Q |
151 |
ataccaccacaaattcctctatattctttaggatatatctctgagttcattgcccacggcactggtcccatcccaggggagaaaaatg |
238 |
Q |
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| T |
52767021 |
atccctccacacattcctcggtactcctgcggatatacttcagagtttactgcccacggcacaggccccatccctggcgagaaaaatg |
52767108 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 49 - 197
Target Start/End: Complemental strand, 392926 - 392778
Alignment:
| Q |
49 |
acagcaagaatcaagaaagtaggaccagtccctaaagcttcagcaacagaaagaaatgtctgagacacaatgagattggaaacccaacacacagtagctg |
148 |
Q |
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||||||| |||||||||||| | | || |||| | ||| ||||||| |||||||| ||| ||||| || | ||| |||| ||||||||| || |||| |
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| T |
392926 |
acagcaataatcaagaaagttgaagcaatcccgatagcgtcagcaatcgaaagaaagctctcggacacgatcaaatttgaaatccaacacacggtcgctg |
392827 |
T |
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| Q |
149 |
acataccaccacaaattcctctatattctttaggatatatctctgagtt |
197 |
Q |
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||| || ||||| || |||| |||||||| |||||||||||||||||| |
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| T |
392826 |
ccatgcccccacatatacctcgatattcttcaggatatatctctgagtt |
392778 |
T |
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