View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3526_low_35 (Length: 250)
Name: NF3526_low_35
Description: NF3526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3526_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 37 - 129
Target Start/End: Complemental strand, 45100762 - 45100670
Alignment:
| Q |
37 |
ataaagaaatttaccacccatcttacatattcgaatattgcaataatcaaattgaattgaatgaaatttaaactactttgagtctaaatgctc |
129 |
Q |
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| T |
45100762 |
ataaataaatttaccacccatcttacatattcgaatattgcaataatcaaattgaattgaatgaaatttaaactactttgagtctaaatgctc |
45100670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 215
Target Start/End: Complemental strand, 45100617 - 45100584
Alignment:
| Q |
182 |
tactaattgtcgtccttcccatcttttaagcgtc |
215 |
Q |
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| T |
45100617 |
tactaattgtcgtccttcccatcttttaagcgtc |
45100584 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 37 - 129
Target Start/End: Complemental strand, 12228942 - 12228850
Alignment:
| Q |
37 |
ataaagaaatttaccacccatcttacatattcgaatattgcaataatcaaattgaattgaatgaaatttaaactactttgagtctaaatgctc |
129 |
Q |
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| T |
12228942 |
ataaataaatttaccacccatcttacatattcgaatattgcaataatcaaattaaattgaataaaatttaaactactttgagtctaaatgctc |
12228850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 43 - 129
Target Start/End: Original strand, 35166998 - 35167083
Alignment:
| Q |
43 |
aaatttaccacccatcttacatattcgaatattgcaataatcaaattgaattgaatgaaatttaaactactttgagtctaaatgctc |
129 |
Q |
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| T |
35166998 |
aaatttaccacccatcttacatatttgaatattgcaataatcaaattaaattgaataaaatttaaacta-tttgagtcgaaatgctc |
35167083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 182 - 215
Target Start/End: Complemental strand, 12228797 - 12228764
Alignment:
| Q |
182 |
tactaattgtcgtccttcccatcttttaagcgtc |
215 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
12228797 |
tactaattgtcgtccttcccatcttttaagcgtc |
12228764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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