View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3526_low_36 (Length: 250)
Name: NF3526_low_36
Description: NF3526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3526_low_36 |
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| [»] chr3 (2 HSPs) |
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| [»] chr4 (6 HSPs) |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 49733911 - 49734152
Alignment:
| Q |
9 |
agcataggtaccactcttgttgagcaacgtttcatgctttcctttctcttcaatcactccatttttaaccactgcaattgaatttgaaccctttatggta |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49733911 |
agcataggtaccactcttgttgagcaacgtttcatgctttcctttctcttcaatcactccatttttaaccactgcaattgaatttgaaccctttatggta |
49734010 |
T |
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| Q |
109 |
gatagtctatgagccaccacaatggtggttctgtccaccctcaatctatcaagtgcatcatgaaccactttttcagactcagcatcaagtgcacttgtgg |
208 |
Q |
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| T |
49734011 |
gatagtctatgagccaccacaatggtggttctgtccaccctcaatctatcaagtgcatcatgaaccactttttcagactcagcatcaagtgcacttgtgg |
49734110 |
T |
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| Q |
209 |
cttcatctagtagtaatattcttggattcttaactatggctc |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
49734111 |
cttcatctagtagtaatattcttggattcttaactatggctc |
49734152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 25 - 239
Target Start/End: Complemental strand, 36289245 - 36289031
Alignment:
| Q |
25 |
ttgttgagcaacgtttcatgctttcctttctcttcaatcactccatttttaaccactgcaattgaatttgaaccctttatggtagatagtctatgagcca |
124 |
Q |
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||||||| ||| |||||||| |||||||||||| ||| || ||||| || |||||||||||| ||| || |||||| || || |||| || || |||| |
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| T |
36289245 |
ttgttgatcaatgtttcatgatttcctttctctgtaatgaccccattcttcaccactgcaattaaatctgcacccttaatagtggataacctgtgtgcca |
36289146 |
T |
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| Q |
125 |
ccacaatggtggttctgtccaccctcaatctatcaagtgcatcatgaaccactttttcagactcagcatcaagtgcacttgtggcttcatctagtagtaa |
224 |
Q |
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| T |
36289145 |
ctataattgtggttcggtcaaccataactcgatccagtgcatcctgaactactttttcggactcagcatcaagggcactggtggcttcatctagtagtaa |
36289046 |
T |
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| Q |
225 |
tattcttggattctt |
239 |
Q |
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|||| |||||||||| |
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| T |
36289045 |
tatttttggattctt |
36289031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 51216591 - 51216350
Alignment:
| Q |
9 |
agcataggtaccactcttgttgagcaacgtttcatgctttcctttctcttcaatcactccatttttaaccactgcaattgaatttgaaccctttatggta |
108 |
Q |
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||||||||| |||| |||||||| ||| | ||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| || |
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| T |
51216591 |
agcataggtgccacccttgttgatcaatatgtcatgttttcctttctcttcaatcactccatttttaacaactgcaattgaatttgcaccctttattgtt |
51216492 |
T |
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| Q |
109 |
gatagtctatgagccaccacaatggtggttctgtccaccctcaatctatcaagtgcatcatgaaccactttttcagactcagcatcaagtgcacttgtgg |
208 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||| |||||||||| |
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| T |
51216491 |
gataatctatgagccaccacaatggtggttctgtccaccctcactctatcaagtgcatcttgaaccactttttcagactctgcatcaagggcacttgtgg |
51216392 |
T |
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| Q |
209 |
cttcatctagtagtaatattcttggattcttaactatggctc |
250 |
Q |
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| ||||||||||||||||||||||| | ||||||||||||| |
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| T |
51216391 |
cctcatctagtagtaatattcttggcctgttaactatggctc |
51216350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 30 - 250
Target Start/End: Complemental strand, 51160210 - 51159990
Alignment:
| Q |
30 |
gagcaacgtttcatgctttcctttctcttcaatcactccatttttaaccactgcaattgaatttgaaccctttatggtagatagtctatgagccaccaca |
129 |
Q |
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|||||||| |||||| |||||||||||| | ||||| ||||| ||||| ||||| ||| ||| || ||| || || || |||| ||||| ||||| | |
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| T |
51160210 |
gagcaacgcttcatgttttcctttctctgctatcacaccattcttaactactgctattaaatctgcacctttgatagtcgataacctatgcgccactatt |
51160111 |
T |
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| Q |
130 |
atggtggttctgtccaccctcaatctatcaagtgcatcatgaaccactttttcagactcagcatcaagtgcacttgtggcttcatctagtagtaatattc |
229 |
Q |
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| T |
51160110 |
attgtcgttcgctccaccattacacggtcaagtgcatcttgtaccactttttcagactcagcatcaagtgcactagttgcttcatctagtaatagtattt |
51160011 |
T |
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| Q |
230 |
ttggattcttaactatggctc |
250 |
Q |
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|||||||||| ||||| |||| |
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| T |
51160010 |
ttggattcttcactatagctc |
51159990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 40 - 239
Target Start/End: Original strand, 29933829 - 29934028
Alignment:
| Q |
40 |
tcatgctttcctttctcttcaatcactccatttttaaccactgcaattgaatttgaaccctttatggtagatagtctatgagccaccacaatggtggttc |
139 |
Q |
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||||| |||||||||||| ||||| ||||| ||||| ||||||||| ||| || ||||||||| || |||| |||||||| || | || || |||| |
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| T |
29933829 |
tcatgttttcctttctctgatatcacaccattcttaacgactgcaattaaatctgcaccctttatagtcgataacctatgagctactattattgttgttc |
29933928 |
T |
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| Q |
140 |
tgtccaccctcaatctatcaagtgcatcatgaaccactttttcagactcagcatcaagtgcacttgtggcttcatctagtagtaatattcttggattctt |
239 |
Q |
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| T |
29933929 |
ggtccaccataacacagtcaagtgcatcttgcaccactttttcagactcagcatcaagtgcactagttgcttcatctagtaatagtattttcggattctt |
29934028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 157 - 250
Target Start/End: Complemental strand, 51149220 - 51149127
Alignment:
| Q |
157 |
tcaagtgcatcatgaaccactttttcagactcagcatcaagtgcacttgtggcttcatctagtagtaatattcttggattcttaactatggctc |
250 |
Q |
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||||||||||| || |||||||||||||||||||||||||||||||| || ||||||||||||| || |||| |||||||||| ||||| |||| |
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| T |
51149220 |
tcaagtgcatcttgtaccactttttcagactcagcatcaagtgcactagttgcttcatctagtaatagtatttttggattcttcactatagctc |
51149127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 157 - 250
Target Start/End: Complemental strand, 51202782 - 51202689
Alignment:
| Q |
157 |
tcaagtgcatcatgaaccactttttcagactcagcatcaagtgcacttgtggcttcatctagtagtaatattcttggattcttaactatggctc |
250 |
Q |
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||||||||||| || ||||| || ||||||||||||||||||||||| || ||||||||||||| || |||| |||||||||| ||||| |||| |
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| T |
51202782 |
tcaagtgcatcttgtaccaccttctcagactcagcatcaagtgcactagttgcttcatctagtaatagtatttttggattcttcactatagctc |
51202689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 181 - 235
Target Start/End: Complemental strand, 51200032 - 51199978
Alignment:
| Q |
181 |
tcagactcagcatcaagtgcacttgtggcttcatctagtagtaatattcttggat |
235 |
Q |
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||||| ||||||||||| |||||||| |||||||| || |||||||||||||||| |
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| T |
51200032 |
tcagattcagcatcaagcgcacttgtagcttcatcgagaagtaatattcttggat |
51199978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 190 - 250
Target Start/End: Original strand, 38566424 - 38566484
Alignment:
| Q |
190 |
gcatcaagtgcacttgtggcttcatctagtagtaatattcttggattcttaactatggctc |
250 |
Q |
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||||||||||||||||| ||||||||||| ||||| |||||||||||||||| ||| |||| |
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| T |
38566424 |
gcatcaagtgcacttgtagcttcatctagaagtaaaattcttggattcttaagtattgctc |
38566484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 179 - 241
Target Start/End: Original strand, 38525276 - 38525338
Alignment:
| Q |
179 |
tttcagactcagcatcaagtgcacttgtggcttcatctagtagtaatattcttggattcttaa |
241 |
Q |
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||||||| || ||||||||||||||||| |||||||| || |||| |||||||||||||||| |
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| T |
38525276 |
tttcagattctgcatcaagtgcacttgtagcttcatcaagaagtagaattcttggattcttaa |
38525338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 248
Target Start/End: Complemental strand, 5823613 - 5823545
Alignment:
| Q |
180 |
ttcagactcagcatcaagtgcacttgtggcttcatctagtagtaatattcttggattcttaactatggc |
248 |
Q |
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||||||||||||||| | ||||||||| |||||||| || || | |||||||||||||| | |||||| |
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| T |
5823613 |
ttcagactcagcatccaatgcacttgttgcttcatcaagaagaaggattcttggattcttcaatatggc |
5823545 |
T |
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