View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3526_low_37 (Length: 249)

Name: NF3526_low_37
Description: NF3526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3526_low_37
NF3526_low_37
[»] chr4 (11 HSPs)
chr4 (117-193)||(55675544-55675621)
chr4 (117-193)||(1936409-1936486)
chr4 (128-193)||(12704570-12704635)
chr4 (114-193)||(23611436-23611516)
chr4 (140-193)||(25232597-25232650)
chr4 (114-193)||(55497577-55497657)
chr4 (151-195)||(8260972-8261016)
chr4 (151-195)||(8274389-8274433)
chr4 (142-193)||(7648146-7648197)
chr4 (141-195)||(4414537-4414591)
chr4 (144-193)||(11792508-11792557)
[»] chr8 (19 HSPs)
chr8 (117-193)||(39375238-39375315)
chr8 (150-220)||(39024490-39024560)
chr8 (140-193)||(44056428-44056481)
chr8 (140-193)||(18656558-18656611)
chr8 (114-193)||(19726612-19726692)
chr8 (114-193)||(36658631-36658711)
chr8 (114-193)||(40485452-40485532)
chr8 (114-193)||(41726257-41726337)
chr8 (114-193)||(42063586-42063666)
chr8 (142-193)||(30360579-30360630)
chr8 (140-193)||(4455281-4455334)
chr8 (114-193)||(3655981-3656061)
chr8 (142-193)||(5969931-5969982)
chr8 (142-193)||(13487078-13487129)
chr8 (142-193)||(27679192-27679243)
chr8 (142-193)||(31008463-31008514)
chr8 (154-193)||(36834028-36834067)
chr8 (150-195)||(12639294-12639339)
chr8 (114-193)||(14910219-14910299)
[»] chr7 (13 HSPs)
chr7 (117-193)||(10198431-10198508)
chr7 (140-193)||(20131279-20131332)
chr7 (117-193)||(16216907-16216984)
chr7 (128-193)||(24096634-24096699)
chr7 (144-190)||(33628189-33628235)
chr7 (114-193)||(29983359-29983439)
chr7 (114-193)||(36099587-36099667)
chr7 (142-193)||(11734170-11734221)
chr7 (142-193)||(47423569-47423620)
chr7 (114-193)||(36858257-36858337)
chr7 (142-190)||(44605860-44605908)
chr7 (114-193)||(14801891-14801971)
chr7 (114-193)||(15248883-15248963)
[»] chr5 (12 HSPs)
chr5 (128-193)||(39051849-39051914)
chr5 (117-195)||(389615-389694)
chr5 (129-190)||(29293433-29293494)
chr5 (114-193)||(3752578-3752658)
chr5 (114-193)||(36745766-36745846)
chr5 (114-193)||(40144028-40144108)
chr5 (142-193)||(8761022-8761073)
chr5 (142-193)||(27194700-27194751)
chr5 (142-193)||(35758149-35758200)
chr5 (142-193)||(14635469-14635520)
chr5 (135-186)||(18942380-18942431)
chr5 (141-186)||(17644133-17644178)
[»] chr1 (17 HSPs)
chr1 (114-193)||(4224979-4225059)
chr1 (140-193)||(5384700-5384753)
chr1 (140-193)||(50655570-50655623)
chr1 (114-193)||(1846813-1846893)
chr1 (114-193)||(28234923-28235003)
chr1 (114-193)||(42866402-42866482)
chr1 (140-191)||(7156158-7156209)
chr1 (142-193)||(12792786-12792837)
chr1 (142-193)||(48303131-48303182)
chr1 (151-193)||(37034824-37034866)
chr1 (114-193)||(9293746-9293826)
chr1 (114-193)||(24984067-24984147)
chr1 (114-193)||(44257894-44257974)
chr1 (114-193)||(46535173-46535253)
chr1 (150-193)||(32364245-32364288)
chr1 (140-186)||(34143554-34143600)
chr1 (114-193)||(3355524-3355604)
[»] chr2 (13 HSPs)
chr2 (115-193)||(35305196-35305275)
chr2 (114-193)||(39678428-39678508)
chr2 (140-193)||(16106641-16106694)
chr2 (140-192)||(16106571-16106623)
chr2 (114-193)||(17513144-17513224)
chr2 (114-193)||(37314841-37314921)
chr2 (114-193)||(39061828-39061908)
chr2 (114-193)||(39761758-39761838)
chr2 (114-193)||(7153560-7153640)
chr2 (114-193)||(29523790-29523870)
chr2 (142-193)||(23293114-23293165)
chr2 (142-193)||(24128877-24128928)
chr2 (141-186)||(21800610-21800655)
[»] chr3 (20 HSPs)
chr3 (140-193)||(29727861-29727914)
chr3 (144-190)||(27002640-27002686)
chr3 (151-193)||(52404287-52404329)
chr3 (144-193)||(5123878-5123927)
chr3 (128-193)||(45158584-45158649)
chr3 (114-193)||(30464985-30465065)
chr3 (142-193)||(2849193-2849244)
chr3 (142-193)||(26725668-26725719)
chr3 (142-193)||(39850819-39850870)
chr3 (142-193)||(44832527-44832578)
chr3 (140-193)||(51537115-51537168)
chr3 (114-193)||(10259113-10259193)
chr3 (114-193)||(11676159-11676239)
chr3 (114-193)||(23241761-23241841)
chr3 (114-193)||(33635007-33635087)
chr3 (142-193)||(29025383-29025434)
chr3 (114-193)||(11335561-11335641)
chr3 (134-186)||(35054629-35054681)
chr3 (151-191)||(45096415-45096455)
chr3 (142-186)||(55258025-55258069)
[»] scaffold0070 (1 HSPs)
scaffold0070 (114-193)||(12845-12925)
[»] chr6 (8 HSPs)
chr6 (150-193)||(8464405-8464448)
chr6 (142-193)||(13630319-13630370)
chr6 (144-193)||(30269717-30269766)
chr6 (114-193)||(21289674-21289754)
chr6 (142-193)||(24068125-24068176)
chr6 (114-190)||(31504647-31504723)
chr6 (114-190)||(31513273-31513349)
chr6 (114-193)||(22351151-22351231)
[»] scaffold0231 (1 HSPs)
scaffold0231 (142-193)||(10961-11012)


Alignment Details
Target: chr4 (Bit Score: 62; Significance: 7e-27; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 117 - 193
Target Start/End: Complemental strand, 55675621 - 55675544
Alignment:
Q  117 tgaacgagtca-cgattaaatctaatttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  55675621 tgaacgagtcatcgattaaatctgatttaatccagttaaatagctatataaatttaatctcaagaccgagttatctaa 55675544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 117 - 193
Target Start/End: Original strand, 1936409 - 1936486
Alignment:
Q  117 tgaacgagtcac-gattaaatctaatttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    |||||||||||| |||||||||  ||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  1936409 tgaacgagtcaccgattaaatccgatttaatccggttaaatagctatataaatttaatctcaagaccgagttatctaa 1936486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 128 - 193
Target Start/End: Original strand, 12704570 - 12704635
Alignment:
Q  128 cgattaaatctaatttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    ||||||||||  ||||||||| ||||||||| |||||||||||||||| |||||||||||||||||    
T  12704570 cgattaaatccgatttaatccggttaaatagttatataaatttaatctcaagaccgagttatctaa 12704635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 193
Target Start/End: Original strand, 23611436 - 23611516
Alignment:
Q  114 aagtgaacgagtcac-gattaaatctaatttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    |||||| |||||||| |||| ||||  | |||||||||||||||| ||||||||||||||||| | |||||||||||||||    
T  23611436 aagtgaccgagtcaccgattcaatccgagttaatccagttaaataactatataaatttaatctaaggaccgagttatctaa 23611516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 193
Target Start/End: Original strand, 25232597 - 25232650
Alignment:
Q  140 atttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    ||||||||  |||||||| ||||||||||||||||| |||||||||||||||||    
T  25232597 atttaatctggttaaatatctatataaatttaatctcaagaccgagttatctaa 25232650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 193
Target Start/End: Complemental strand, 55497657 - 55497577
Alignment:
Q  114 aagtgaacgagtcac-gattaaatctaatttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    |||||| |||||||| |||| ||||  | ||||||| |||||||| ||||||||||||||||| | |||||||||||||||    
T  55497657 aagtgaccgagtcaccgattcaatccgagttaatccggttaaataactatataaatttaatctaaggaccgagttatctaa 55497577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 195
Target Start/End: Original strand, 8260972 - 8261016
Alignment:
Q  151 ttaaatagctatataaatttaatcttaagaccgagttatctaatc 195  Q
    |||||||| |||||||||||||||| ||||||||||||| |||||    
T  8260972 ttaaatagttatataaatttaatctcaagaccgagttatgtaatc 8261016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 151 - 195
Target Start/End: Original strand, 8274389 - 8274433
Alignment:
Q  151 ttaaatagctatataaatttaatcttaagaccgagttatctaatc 195  Q
    |||||||| |||||||||||||||| ||||||||||||| |||||    
T  8274389 ttaaatagttatataaatttaatctcaagaccgagttatgtaatc 8274433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 193
Target Start/End: Complemental strand, 7648197 - 7648146
Alignment:
Q  142 ttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    ||||||| |||| ||| ||||||||||||||||| | |||||||||||||||    
T  7648197 ttaatccggttatataactatataaatttaatctaaggaccgagttatctaa 7648146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 195
Target Start/End: Complemental strand, 4414591 - 4414537
Alignment:
Q  141 tttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaatc 195  Q
    ||||||| ||||||||| ||||| | |||||||||||||||||||| || |||||    
T  4414591 tttaatctagttaaatacctataaatatttaatcttaagaccgagtcatttaatc 4414537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 193
Target Start/End: Complemental strand, 11792557 - 11792508
Alignment:
Q  144 aatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    ||||| |||||||| ||||||||||||| ||| | |||||||||||||||    
T  11792557 aatccggttaaataactatataaatttattctaaggaccgagttatctaa 11792508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 117 - 193
Target Start/End: Complemental strand, 39375315 - 39375238
Alignment:
Q  117 tgaacgagtcac-gattaaatctaatttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    |||||||||||| |||||||||  ||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  39375315 tgaacgagtcaccgattaaatccgatttaatccggttaaatagctatataaatttaatctcaagaccgagttatctaa 39375238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 150 - 220
Target Start/End: Complemental strand, 39024560 - 39024490
Alignment:
Q  150 gttaaatagctatataaatttaatcttaagaccgagttatctaatcagattattcgaattgatacggttca 220  Q
    |||||||||||||||||||||||||| ||||||||||||||||| ||  | || ||||||||| |||||||    
T  39024560 gttaaatagctatataaatttaatctcaagaccgagttatctaaccaagtcatccgaattgatccggttca 39024490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 140 - 193
Target Start/End: Original strand, 44056428 - 44056481
Alignment:
Q  140 atttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    ||||||||  |||||||||||||||||||||||||| |||||||||||||||||    
T  44056428 atttaatctggttaaatagctatataaatttaatctcaagaccgagttatctaa 44056481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 193
Target Start/End: Original strand, 18656558 - 18656611
Alignment:
Q  140 atttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    ||||||||| |||| ||||||||||||||||||||| | |||||||||||||||    
T  18656558 atttaatccggttagatagctatataaatttaatctcacgaccgagttatctaa 18656611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 193
Target Start/End: Original strand, 19726612 - 19726692
Alignment:
Q  114 aagtgaacgagtcac-gattaaatctaatttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    |||||| |||||||| |||| ||||  | ||||||| |||||||| ||||||||||||||||| | |||||||||||||||    
T  19726612 aagtgaccgagtcactgattcaatccgagttaatccggttaaataactatataaatttaatctaaggaccgagttatctaa 19726692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 193
Target Start/End: Complemental strand, 36658711 - 36658631
Alignment:
Q  114 aagtgaacgagtcac-gattaaatctaatttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    |||||| |||||||| |||| ||||  | ||||||| |||||||| ||||||||||||||||| | |||||||||||||||    
T  36658711 aagtgaccgagtcaccgattcaatccgagttaatccggttaaataactatataaatttaatctaaggaccgagttatctaa 36658631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 193
Target Start/End: Original strand, 40485452 - 40485532
Alignment:
Q  114 aagtgaacgagtcac-gattaaatctaatttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    |||||| |||||||| |||| ||||  | ||||||| |||||||| ||||||||||||||||| | |||||||||||||||    
T  40485452 aagtgaccgagtcaccgattcaatccgagttaatccggttaaataactatataaatttaatctaaggaccgagttatctaa 40485532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 193
Target Start/End: Original strand, 41726257 - 41726337
Alignment:
Q  114 aagtgaacgagtcac-gattaaatctaatttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    |||||| |||||||| |||| ||||  | ||||||| |||||||| ||||||||||||||||| | |||||||||||||||    
T  41726257 aagtgaccgagtcaccgattcaatccgagttaatccggttaaataactatataaatttaatctaaggaccgagttatctaa 41726337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 193
Target Start/End: Complemental strand, 42063666 - 42063586
Alignment:
Q  114 aagtgaacgagtcac-gattaaatctaatttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    |||||| |||||||| |||| ||||  | ||||||| |||||||| ||||||||||||||||| | |||||||||||||||    
T  42063666 aagtgaccgagtcaccgattcaatccgagttaatccggttaaataactatataaatttaatctaaggaccgagttatctaa 42063586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 193
Target Start/End: Complemental strand, 30360630 - 30360579
Alignment:
Q  142 ttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    ||||||| |||||||| ||||||||||||||||| | |||||||||||||||    
T  30360630 ttaatccggttaaataactatataaatttaatctaaggaccgagttatctaa 30360579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 193
Target Start/End: Original strand, 4455281 - 4455334
Alignment:
Q  140 atttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    ||||||||| |||| |||||||||| |||||||||| || ||||||||||||||    
T  4455281 atttaatccggttagatagctatatgaatttaatctcaataccgagttatctaa 4455334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 193
Target Start/End: Complemental strand, 3656061 - 3655981
Alignment:
Q  114 aagtgaacgagtcac-gattaaatctaatttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    |||||| |||||||| |||| ||||  | ||||||| |||||||| ||||||||||||||||| |  ||||||||||||||    
T  3656061 aagtgaccgagtcaccgattcaatccgagttaatccggttaaataactatataaatttaatctaagaaccgagttatctaa 3655981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 193
Target Start/End: Original strand, 5969931 - 5969982
Alignment:
Q  142 ttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    ||||||| |||| ||| ||||||||||||||||| | |||||||||||||||    
T  5969931 ttaatccggttatataactatataaatttaatctaaggaccgagttatctaa 5969982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 193
Target Start/End: Original strand, 13487078 - 13487129
Alignment:
Q  142 ttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    ||||||| |||||||| |||||||||| |||||| | |||||||||||||||    
T  13487078 ttaatccggttaaataactatataaatataatctaaggaccgagttatctaa 13487129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 193
Target Start/End: Original strand, 27679192 - 27679243
Alignment:
Q  142 ttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    ||||||| |||||||| ||||||||||||||||| | || ||||||||||||    
T  27679192 ttaatccggttaaataactatataaatttaatctaaggatcgagttatctaa 27679243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 193
Target Start/End: Original strand, 31008463 - 31008514
Alignment:
Q  142 ttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    ||||||| |||||||| ||||||||||||||||| | ||| |||||||||||    
T  31008463 ttaatccggttaaataactatataaatttaatctaaggactgagttatctaa 31008514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 193
Target Start/End: Complemental strand, 36834067 - 36834028
Alignment:
Q  154 aatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    |||||||||||||||||||||| |||| ||||||||||||    
T  36834067 aatagctatataaatttaatctcaagatcgagttatctaa 36834028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 195
Target Start/End: Original strand, 12639294 - 12639339
Alignment:
Q  150 gttaaatagctatataaatttaatcttaagaccgagttatctaatc 195  Q
    |||||||| ||||||||||||||||| || ||||| ||||||||||    
T  12639294 gttaaatacctatataaatttaatctcaaaaccgaattatctaatc 12639339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 193
Target Start/End: Complemental strand, 14910299 - 14910219
Alignment:
Q  114 aagtgaacgagtcac-gattaaatctaatttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    |||||| |||||||| |||| ||||  | ||||||| |||||||| | ||||||||||||||| | || ||||||||||||    
T  14910299 aagtgaccgagtcaccgattcaatccgagttaatccggttaaataacaatataaatttaatctaaggatcgagttatctaa 14910219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 4e-22; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 117 - 193
Target Start/End: Complemental strand, 10198508 - 10198431
Alignment:
Q  117 tgaacgagtcac-gattaaatctaatttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    |||||||||||| |||||||||  |||||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  10198508 tgaacgagtcaccgattaaatccgatttaatccagttaaatagctatataaatttaatctcaagatcgagttatctaa 10198431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 140 - 193
Target Start/End: Original strand, 20131279 - 20131332
Alignment:
Q  140 atttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  20131279 atttaatccggttaaatagctatataaatttaatcttaagaccgaattatctaa 20131332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 117 - 193
Target Start/End: Original strand, 16216907 - 16216984
Alignment:
Q  117 tgaacgagtcacg-attaaatctaatttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    ||||||||||||  ||||||||  ||||||||| |||||||| ||||||||||||||||| ||||| |||||||||||    
T  16216907 tgaacgagtcacctattaaatccgatttaatccggttaaataactatataaatttaatctcaagactgagttatctaa 16216984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 128 - 193
Target Start/End: Original strand, 24096634 - 24096699
Alignment:
Q  128 cgattaaatctaatttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    ||||||||||  ||||||||| ||||||||| |||||||||||||||| |||| ||||||||||||    
T  24096634 cgattaaatccgatttaatccggttaaatagttatataaatttaatctcaagatcgagttatctaa 24096699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 144 - 190
Target Start/End: Original strand, 33628189 - 33628235
Alignment:
Q  144 aatccagttaaatagctatataaatttaatcttaagaccgagttatc 190  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||    
T  33628189 aatccggttaaatagctatataaatttaatctcaagaccgagttatc 33628235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 193
Target Start/End: Complemental strand, 29983439 - 29983359
Alignment:
Q  114 aagtgaacgagtcac-gattaaatctaatttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    |||||| |||||||| |||| ||||  | ||||||| |||||||| ||||||||||||||||| | |||||||||||||||    
T  29983439 aagtgaccgagtcaccgattcaatccgagttaatccggttaaataactatataaatttaatctaaggaccgagttatctaa 29983359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 193
Target Start/End: Original strand, 36099587 - 36099667
Alignment:
Q  114 aagtgaacgagtcac-gattaaatctaatttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    |||||| |||||||| |||| ||||  | ||||||| |||||||| ||||||||||||||||| | |||||||||||||||    
T  36099587 aagtgaccgagtcaccgattcaatccgagttaatccggttaaataactatataaatttaatctaaggaccgagttatctaa 36099667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 193
Target Start/End: Original strand, 11734170 - 11734221
Alignment:
Q  142 ttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    ||||||| |||||||| ||||||||||||||||| | |||||||||||||||    
T  11734170 ttaatccggttaaataactatataaatttaatctaaggaccgagttatctaa 11734221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 193
Target Start/End: Complemental strand, 47423620 - 47423569
Alignment:
Q  142 ttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    ||||||| |||||||| ||||||||||||||||| | |||||||||||||||    
T  47423620 ttaatccggttaaataactatataaatttaatctaaggaccgagttatctaa 47423569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 193
Target Start/End: Complemental strand, 36858337 - 36858257
Alignment:
Q  114 aagtgaacgagtcac-gattaaatctaatttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    |||||| |||||||| |||| ||||  | ||||||| |||||||| || |||||||||||||| | |||||||||||||||    
T  36858337 aagtgaccgagtcaccgattcaatccgagttaatccggttaaataactgtataaatttaatctaaggaccgagttatctaa 36858257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 190
Target Start/End: Original strand, 44605860 - 44605908
Alignment:
Q  142 ttaatccagttaaatagctatataaatttaatcttaagaccgagttatc 190  Q
    ||||||| |||||||| ||||||||||||||||| | ||||||||||||    
T  44605860 ttaatccggttaaataactatataaatttaatctaaggaccgagttatc 44605908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 193
Target Start/End: Original strand, 14801891 - 14801971
Alignment:
Q  114 aagtgaacgagtcac-gattaaatctaatttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    |||||| |||||||| |||| ||||  | ||||||| | |||||| ||||||| ||||||||| | |||||||||||||||    
T  14801891 aagtgaccgagtcaccgattcaatccgagttaatccggataaataactatatacatttaatctaaggaccgagttatctaa 14801971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 193
Target Start/End: Original strand, 15248883 - 15248963
Alignment:
Q  114 aagtgaacgagtcac-gattaaatctaatttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    |||||| |||||||| |||| ||||  | ||||||| | |||||| ||||||| ||||||||| | |||||||||||||||    
T  15248883 aagtgaccgagtcaccgattcaatccgagttaatccggataaataactatatacatttaatctaaggaccgagttatctaa 15248963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 128 - 193
Target Start/End: Original strand, 39051849 - 39051914
Alignment:
Q  128 cgattaaatctaatttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  39051849 cgattaaatccgatttaatccagttaaatagctatataaatttaatcttaagaccgagatatctaa 39051914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 117 - 195
Target Start/End: Original strand, 389615 - 389694
Alignment:
Q  117 tgaacgagtcacg-attaaatctaatttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaatc 195  Q
    ||||||||||||| ||||||||  ||||||||| |||||||| || |||||||||||||| |||||| ||||||||||||    
T  389615 tgaacgagtcacggattaaatccgatttaatccggttaaataactgtataaatttaatctcaagaccaagttatctaatc 389694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 129 - 190
Target Start/End: Complemental strand, 29293494 - 29293433
Alignment:
Q  129 gattaaatctaatttaatccagttaaatagctatataaatttaatcttaagaccgagttatc 190  Q
    |||| |||| |||||||||| |||||||| ||||||||||||||||| ||||||||||||||    
T  29293494 gattcaatccaatttaatccggttaaatatctatataaatttaatctcaagaccgagttatc 29293433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 193
Target Start/End: Complemental strand, 3752658 - 3752578
Alignment:
Q  114 aagtgaacgagtcac-gattaaatctaatttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    |||||| |||||||| |||||||||  | ||||||| |||| ||| ||||||||||||||||| | |||||||||||||||    
T  3752658 aagtgaccgagtcaccgattaaatccgagttaatccggttatataactatataaatttaatctaaggaccgagttatctaa 3752578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 193
Target Start/End: Original strand, 36745766 - 36745846
Alignment:
Q  114 aagtgaacgagtcac-gattaaatctaatttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    |||||| |||||||| |||| ||||  | ||||||| |||||||| ||||||||||||||||| | |||||||||||||||    
T  36745766 aagtgaccgagtcaccgattcaatccgagttaatccggttaaataactatataaatttaatctaaggaccgagttatctaa 36745846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 193
Target Start/End: Complemental strand, 40144108 - 40144028
Alignment:
Q  114 aagtgaacgagtcac-gattaaatctaatttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    |||||| |||||||| |||| ||||  | ||||||| |||||||| ||||||||||||||||| | |||||||||||||||    
T  40144108 aagtgaccgagtcaccgattcaatccgagttaatccggttaaataactatataaatttaatctaaggaccgagttatctaa 40144028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 193
Target Start/End: Original strand, 8761022 - 8761073
Alignment:
Q  142 ttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    ||||||| |||||||| ||||||||||||||||| | |||||||||||||||    
T  8761022 ttaatccggttaaataactatataaatttaatctaaggaccgagttatctaa 8761073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 193
Target Start/End: Original strand, 27194700 - 27194751
Alignment:
Q  142 ttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    ||||||| |||||||| ||||||||||||||||| | |||||||||||||||    
T  27194700 ttaatccggttaaataactatataaatttaatctaaggaccgagttatctaa 27194751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 193
Target Start/End: Complemental strand, 35758200 - 35758149
Alignment:
Q  142 ttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    ||||||| |||||||| ||||||||||||||||| | |||||||||||||||    
T  35758200 ttaatccggttaaataactatataaatttaatctaaggaccgagttatctaa 35758149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 193
Target Start/End: Complemental strand, 14635520 - 14635469
Alignment:
Q  142 ttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    ||||||| |||| ||| ||||||||||||||||| | |||||||||||||||    
T  14635520 ttaatccggttatataactatataaatttaatctaaggaccgagttatctaa 14635469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 186
Target Start/End: Complemental strand, 18942431 - 18942380
Alignment:
Q  135 atctaatttaatccagttaaatagctatataaatttaatcttaagaccgagt 186  Q
    ||||| ||||||| ||||||||| ||||| | ||||||||||||||||||||    
T  18942431 atctattttaatctagttaaatacctataaatatttaatcttaagaccgagt 18942380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 186
Target Start/End: Original strand, 17644133 - 17644178
Alignment:
Q  141 tttaatccagttaaatagctatataaatttaatcttaagaccgagt 186  Q
    ||||||| ||||||||| ||||| | ||||||||||||||||||||    
T  17644133 tttaatctagttaaatacctataaatatttaatcttaagaccgagt 17644178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 114 - 193
Target Start/End: Original strand, 4224979 - 4225059
Alignment:
Q  114 aagtgaacgagtcac-gattaaatctaatttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    ||||||||||||||| ||||||||   ||||||||| |||||||||||||||||||||||||| |||| ||||||||||||    
T  4224979 aagtgaacgagtcaccgattaaattcgatttaatccggttaaatagctatataaatttaatctcaagaacgagttatctaa 4225059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 140 - 193
Target Start/End: Original strand, 5384700 - 5384753
Alignment:
Q  140 atttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  5384700 atttaatccggttaaatagctatataaatttaatctcaagaccgagttatctaa 5384753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 193
Target Start/End: Complemental strand, 50655623 - 50655570
Alignment:
Q  140 atttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    ||||||||| |||||||| ||||||||||||||||| | |||||||||||||||    
T  50655623 atttaatccggttaaataactatataaatttaatctaaggaccgagttatctaa 50655570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 193
Target Start/End: Original strand, 1846813 - 1846893
Alignment:
Q  114 aagtgaacgagtcac-gattaaatctaatttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    |||||| |||||||| |||| ||||  | ||||||| |||||||| ||||||||||||||||| | |||||||||||||||    
T  1846813 aagtgaccgagtcaccgattcaatccgagttaatccggttaaataactatataaatttaatctaaggaccgagttatctaa 1846893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 193
Target Start/End: Complemental strand, 28235003 - 28234923
Alignment:
Q  114 aagtgaacgagtcac-gattaaatctaatttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    |||||| |||||||| |||| ||||  | ||||||| |||||||| ||||||||||||||||| | |||||||||||||||    
T  28235003 aagtgaccgagtcaccgattcaatccgagttaatccggttaaataactatataaatttaatctaaggaccgagttatctaa 28234923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 193
Target Start/End: Complemental strand, 42866482 - 42866402
Alignment:
Q  114 aagtgaacgagtcac-gattaaatctaatttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    |||||| |||||||| |||| ||||  | ||||||| |||||||| ||||||||||||||||| | |||||||||||||||    
T  42866482 aagtgaccgagtcaccgattcaatccgaattaatccggttaaataactatataaatttaatctaaggaccgagttatctaa 42866402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 191
Target Start/End: Original strand, 7156158 - 7156209
Alignment:
Q  140 atttaatccagttaaatagctatataaatttaatcttaagaccgagttatct 191  Q
    |||||||||  ||||||| ||||||||||||||||| |||||||||||||||    
T  7156158 atttaatccgcttaaatatctatataaatttaatctcaagaccgagttatct 7156209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 193
Target Start/End: Complemental strand, 12792837 - 12792786
Alignment:
Q  142 ttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    ||||||| |||||||| ||||||||||||||||| | |||||||||||||||    
T  12792837 ttaatccggttaaataactatataaatttaatctaaggaccgagttatctaa 12792786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 193
Target Start/End: Original strand, 48303131 - 48303182
Alignment:
Q  142 ttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    ||||||| |||||||| ||||||||||||||||| | |||||||||||||||    
T  48303131 ttaatccggttaaataactatataaatttaatctaaggaccgagttatctaa 48303182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 151 - 193
Target Start/End: Original strand, 37034824 - 37034866
Alignment:
Q  151 ttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    |||||||||||||||| |||||||| |||||||||||||||||    
T  37034824 ttaaatagctatataagtttaatctcaagaccgagttatctaa 37034866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 193
Target Start/End: Complemental strand, 9293826 - 9293746
Alignment:
Q  114 aagtgaacgagtcac-gattaaatctaatttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    |||||| |||||||| |||| ||||  | |||||||  ||||||| ||||||||||||||||| | |||||||||||||||    
T  9293826 aagtgaccgagtcaccgattcaatccgagttaatccgattaaataactatataaatttaatctaaggaccgagttatctaa 9293746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 193
Target Start/End: Original strand, 24984067 - 24984147
Alignment:
Q  114 aagtgaacgagtcac-gattaaatctaatttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    |||||| |||||||| |||| ||||  | ||||||| |||| ||| ||||||||||||||||| | |||||||||||||||    
T  24984067 aagtgaccgagtcaccgattcaatccgagttaatccggttatataactatataaatttaatctaaggaccgagttatctaa 24984147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 193
Target Start/End: Complemental strand, 44257974 - 44257894
Alignment:
Q  114 aagtgaacgagtcac-gattaaatctaatttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    |||||| |||||||| |||| ||||  | |||||||  ||||||| ||||||||||||||||| | |||||||||||||||    
T  44257974 aagtgaccgagtcaccgattcaatccgagttaatccgattaaataactatataaatttaatctaaggaccgagttatctaa 44257894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 193
Target Start/End: Original strand, 46535173 - 46535253
Alignment:
Q  114 aagtgaacgagtcac-gattaaatctaatttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    |||||| |||||||| |||| ||||  | ||||||| ||| |||| ||||||||||||||||| | |||||||||||||||    
T  46535173 aagtgaccgagtcaccgattcaatccgagttaatccggtttaataactatataaatttaatctaaggaccgagttatctaa 46535253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 193
Target Start/End: Complemental strand, 32364288 - 32364245
Alignment:
Q  150 gttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    ||||||||| |||| |||||||||||||||||||||| ||||||    
T  32364288 gttaaatagttataaaaatttaatcttaagaccgagtcatctaa 32364245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 186
Target Start/End: Complemental strand, 34143600 - 34143554
Alignment:
Q  140 atttaatccagttaaatagctatataaatttaatcttaagaccgagt 186  Q
    |||||||||  ||||||| ||||||||||||||||| ||||||||||    
T  34143600 atttaatccgcttaaatatctatataaatttaatctcaagaccgagt 34143554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 193
Target Start/End: Complemental strand, 3355604 - 3355524
Alignment:
Q  114 aagtgaacgagtcac-gattaaatctaatttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    |||||| |||||||| |||| ||||  | ||||||| |||| ||| ||||||||||||||||| | |||||| ||||||||    
T  3355604 aagtgaccgagtcaccgattcaatccgagttaatccggttatataactatataaatttaatctaaggaccgaattatctaa 3355524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 115 - 193
Target Start/End: Original strand, 35305196 - 35305275
Alignment:
Q  115 agtgaacgagtcac-gattaaatctaatttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    |||||||| ||||| |||||||||  ||||||| | |||| ||||||||||||||||||||| |||||||||||||||||    
T  35305196 agtgaacgtgtcaccgattaaatccgatttaattcggttagatagctatataaatttaatctcaagaccgagttatctaa 35305275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 193
Target Start/End: Complemental strand, 39678508 - 39678428
Alignment:
Q  114 aagtgaacgagtcac-gattaaatctaatttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    |||||| |||||||| |||| ||||  | |||||||||||||||| ||||||||||||||||| | |||||||||||||||    
T  39678508 aagtgaccgagtcaccgattcaatccgagttaatccagttaaataactatataaatttaatctaaggaccgagttatctaa 39678428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 193
Target Start/End: Original strand, 16106641 - 16106694
Alignment:
Q  140 atttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    |||||||| ||||||||||||||| |||||||||||||||| ||||| ||||||    
T  16106641 atttaatctagttaaatagctataaaaatttaatcttaagatcgagtcatctaa 16106694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 140 - 192
Target Start/End: Original strand, 16106571 - 16106623
Alignment:
Q  140 atttaatccagttaaatagctatataaatttaatcttaagaccgagttatcta 192  Q
    |||||||| ||||||||||||||| |||||||||||||||| ||||| |||||    
T  16106571 atttaatctagttaaatagctataaaaatttaatcttaagatcgagtcatcta 16106623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 193
Target Start/End: Complemental strand, 17513224 - 17513144
Alignment:
Q  114 aagtgaacgagtcac-gattaaatctaatttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    |||||| |||||||| |||| ||||  | ||||||| |||||||| ||||||||||||||||| | |||||||||||||||    
T  17513224 aagtgaccgagtcaccgattcaatccgagttaatccggttaaataactatataaatttaatctaaggaccgagttatctaa 17513144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 193
Target Start/End: Original strand, 37314841 - 37314921
Alignment:
Q  114 aagtgaacgagtcac-gattaaatctaatttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    |||||| |||||||| |||| ||||  | ||||||| |||||||| ||||||||||||||||| | |||||||||||||||    
T  37314841 aagtgaccgagtcaccgattcaatccgagttaatccggttaaataactatataaatttaatctaaggaccgagttatctaa 37314921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 193
Target Start/End: Original strand, 39061828 - 39061908
Alignment:
Q  114 aagtgaacgagtcac-gattaaatctaatttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    |||||| |||||||| |||| ||||  | ||||||| |||||||| ||||||||||||||||| | |||||||||||||||    
T  39061828 aagtgaccgagtcaccgattcaatccgagttaatccggttaaataactatataaatttaatctaaggaccgagttatctaa 39061908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 193
Target Start/End: Original strand, 39761758 - 39761838
Alignment:
Q  114 aagtgaacgagtcac-gattaaatctaatttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    |||||| |||||||| |||| ||||  ||||||||| |||||||||||| |||||| |||||| ||| |||||||||||||    
T  39761758 aagtgatcgagtcaccgattcaatccgatttaatccggttaaatagctacataaatataatctcaaggccgagttatctaa 39761838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 193
Target Start/End: Complemental strand, 7153640 - 7153560
Alignment:
Q  114 aagtgaacgagtcac-gattaaatctaatttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    |||||| |||||||| |||| ||||  | |||||||  ||||||| ||||||||||||||||| | |||||||||||||||    
T  7153640 aagtgaccgagtcaccgattcaatccgagttaatccgattaaataactatataaatttaatctaaggaccgagttatctaa 7153560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 193
Target Start/End: Original strand, 29523790 - 29523870
Alignment:
Q  114 aagtgaacgagtcac-gattaaatctaatttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    |||||| |||||||| |||| ||| | | |||||||  ||||||| ||||||||||||||||| | |||||||||||||||    
T  29523790 aagtgaccgagtcaccgattcaatttgagttaatccgattaaataactatataaatttaatctaaggaccgagttatctaa 29523870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 193
Target Start/End: Original strand, 23293114 - 23293165
Alignment:
Q  142 ttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    ||||||| |||||||| |||| |||||||||||| | |||||||||||||||    
T  23293114 ttaatccggttaaataactatgtaaatttaatctaaggaccgagttatctaa 23293165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 193
Target Start/End: Complemental strand, 24128928 - 24128877
Alignment:
Q  142 ttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    ||||||| |||||||| ||||||||||||||||| | |||| ||||||||||    
T  24128928 ttaatccggttaaataactatataaatttaatctaaggacctagttatctaa 24128877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 186
Target Start/End: Original strand, 21800610 - 21800655
Alignment:
Q  141 tttaatccagttaaatagctatataaatttaatcttaagaccgagt 186  Q
    ||||||| ||||||||| ||||| | ||||||||||||||||||||    
T  21800610 tttaatctagttaaatacctataaatatttaatcttaagaccgagt 21800655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 140 - 193
Target Start/End: Complemental strand, 29727914 - 29727861
Alignment:
Q  140 atttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    |||||||| ||||||||||||||| |||||||||||||||||||||| ||||||    
T  29727914 atttaatctagttaaatagctataaaaatttaatcttaagaccgagtcatctaa 29727861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 144 - 190
Target Start/End: Complemental strand, 27002686 - 27002640
Alignment:
Q  144 aatccagttaaatagctatataaatttaatcttaagaccgagttatc 190  Q
    ||||| |||||||||||||||||||||||||| ||||||||||||||    
T  27002686 aatccggttaaatagctatataaatttaatctcaagaccgagttatc 27002640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 151 - 193
Target Start/End: Original strand, 52404287 - 52404329
Alignment:
Q  151 ttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    ||||||||||||||||||||||||| |||||||||||||||||    
T  52404287 ttaaatagctatataaatttaatctcaagaccgagttatctaa 52404329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 193
Target Start/End: Complemental strand, 5123927 - 5123878
Alignment:
Q  144 aatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    |||||||||||||| ||||||||||||||||| |||| ||||||||||||    
T  5123927 aatccagttaaatacctatataaatttaatctcaagagcgagttatctaa 5123878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 128 - 193
Target Start/End: Complemental strand, 45158649 - 45158584
Alignment:
Q  128 cgattaaatctaatttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    ||||||||||  |||| ||||  |||||||| |||||||||||||||| |||||||||||||||||    
T  45158649 cgattaaatccgattttatccgattaaatagttatataaatttaatctcaagaccgagttatctaa 45158584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 114 - 193
Target Start/End: Original strand, 30464985 - 30465065
Alignment:
Q  114 aagtgaacgagtcac-gattaaatctaatttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    |||||| |||||||| |||| ||||  | ||||||| |||||||| ||||||||||||||||| | |||||||||||||||    
T  30464985 aagtgaccgagtcaccgattcaatccgagttaatccggttaaataactatataaatttaatctaaggaccgagttatctaa 30465065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 193
Target Start/End: Original strand, 2849193 - 2849244
Alignment:
Q  142 ttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    |||||||| ||||||| ||||||||||||||||| | |||||||||||||||    
T  2849193 ttaatccaattaaataactatataaatttaatctaaggaccgagttatctaa 2849244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 193
Target Start/End: Complemental strand, 26725719 - 26725668
Alignment:
Q  142 ttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    ||||||| |||||||| ||||||||||||||||| | |||||||||||||||    
T  26725719 ttaatccggttaaataactatataaatttaatctaaggaccgagttatctaa 26725668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 193
Target Start/End: Complemental strand, 39850870 - 39850819
Alignment:
Q  142 ttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    ||||||| |||||||| ||||||||||||||||| | |||||||||||||||    
T  39850870 ttaatccggttaaataactatataaatttaatctaaggaccgagttatctaa 39850819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 193
Target Start/End: Complemental strand, 44832578 - 44832527
Alignment:
Q  142 ttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    ||||||| |||||||| ||||||||||||||||| | |||||||||||||||    
T  44832578 ttaatccggttaaataactatataaatttaatctaaggaccgagttatctaa 44832527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 140 - 193
Target Start/End: Original strand, 51537115 - 51537168
Alignment:
Q  140 atttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    ||||||||  ||||||||| |||| |||||||||||||||||||||| ||||||    
T  51537115 atttaatctggttaaatagttataaaaatttaatcttaagaccgagtcatctaa 51537168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 193
Target Start/End: Original strand, 10259113 - 10259193
Alignment:
Q  114 aagtgaacgagtcac-gattaaatctaatttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    |||||| |||||||| |||| ||||  | ||||||| |||||||| ||||||||||||||||| | |||||| ||||||||    
T  10259113 aagtgaccgagtcaccgattcaatccgagttaatccggttaaataactatataaatttaatctaaggaccgaattatctaa 10259193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 193
Target Start/End: Original strand, 11676159 - 11676239
Alignment:
Q  114 aagtgaacgagtcac-gattaaatctaatttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    |||||| |||||||| |||| ||||  | ||||||| |||||||| ||||||||||||||| | | |||||||||||||||    
T  11676159 aagtgaccgagtcaccgattcaatccgagttaatccggttaaataactatataaatttaatttaaggaccgagttatctaa 11676239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 193
Target Start/End: Original strand, 23241761 - 23241841
Alignment:
Q  114 aagtgaacgagtcac-gattaaatctaatttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    |||||| |||||||| |||| ||||  | ||||||| |||||||| ||||||||||||| ||| | |||||||||||||||    
T  23241761 aagtgaccgagtcaccgattcaatccgagttaatccggttaaataactatataaatttattctaaggaccgagttatctaa 23241841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 193
Target Start/End: Complemental strand, 33635087 - 33635007
Alignment:
Q  114 aagtgaacgagtcac-gattaaatctaatttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    |||||| |||||||| |||| ||||  | ||||||  |||||||| ||||||||||||||||| | |||||||||||||||    
T  33635087 aagtgaccgagtcaccgattcaatccgagttaatctggttaaataactatataaatttaatctaaggaccgagttatctaa 33635007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 193
Target Start/End: Complemental strand, 29025434 - 29025383
Alignment:
Q  142 ttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    ||||||| |||| ||| ||||||||||||||||| | |||||||||||||||    
T  29025434 ttaatccggttatataactatataaatttaatctaaggaccgagttatctaa 29025383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 193
Target Start/End: Original strand, 11335561 - 11335641
Alignment:
Q  114 aagtgaacgagtcac-gattaaatctaatttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    |||||| |||||||| |||| ||||  | ||||||| ||||||||   ||||||||||||||| | |||||||||||||||    
T  11335561 aagtgaccgagtcaccgattcaatccgagttaatccggttaaataagaatataaatttaatctaaggaccgagttatctaa 11335641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 186
Target Start/End: Original strand, 35054629 - 35054681
Alignment:
Q  134 aatctaatttaatccagttaaatagctatataaatttaatcttaagaccgagt 186  Q
    |||| ||||||||| |||||||||  |||| |||||||||| |||||||||||    
T  35054629 aatccaatttaatctagttaaatacatataaaaatttaatcgtaagaccgagt 35054681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 191
Target Start/End: Complemental strand, 45096455 - 45096415
Alignment:
Q  151 ttaaatagctatataaatttaatcttaagaccgagttatct 191  Q
    ||||||| ||||||||||||||||| |||||||| ||||||    
T  45096455 ttaaatatctatataaatttaatctcaagaccgatttatct 45096415  T

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Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 186
Target Start/End: Original strand, 55258025 - 55258069
Alignment:
Q  142 ttaatccagttaaatagctatataaatttaatcttaagaccgagt 186  Q
    ||||||| |||||||| ||||||||||||||||| | ||||||||    
T  55258025 ttaatccggttaaataactatataaatttaatctaaggaccgagt 55258069  T

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Target: scaffold0070 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 114 - 193
Target Start/End: Complemental strand, 12925 - 12845
Alignment:
Q  114 aagtgaacgagtcac-gattaaatctaatttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    |||||| |||||||| |||| |||| || ||||||| |||||||| ||||||||||||||||| | |||||||||||||||    
T  12925 aagtgaccgagtcaccgatttaatccaagttaatccggttaaataactatataaatttaatctaaggaccgagttatctaa 12845  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 150 - 193
Target Start/End: Complemental strand, 8464448 - 8464405
Alignment:
Q  150 gttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  8464448 gttaaatagctatataaatttaatctcaagaccgagttatctaa 8464405  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 193
Target Start/End: Complemental strand, 13630370 - 13630319
Alignment:
Q  142 ttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    ||||||| ||||||||  |||||||||||||||| |||||||||||||||||    
T  13630370 ttaatccggttaaataattatataaatttaatctaaagaccgagttatctaa 13630319  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 193
Target Start/End: Complemental strand, 30269766 - 30269717
Alignment:
Q  144 aatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    ||||| |||||||| ||||||||||||||||| | |||||||||||||||    
T  30269766 aatccggttaaataactatataaatttaatctaaggaccgagttatctaa 30269717  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 193
Target Start/End: Complemental strand, 21289754 - 21289674
Alignment:
Q  114 aagtgaacgagtcac-gattaaatctaatttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    |||||| |||||||| |||| ||||  | ||||||| |||| ||| ||||||||||||||||| | |||||||||||||||    
T  21289754 aagtgaccgagtcaccgattcaatccgagttaatccggttatataactatataaatttaatctaaggaccgagttatctaa 21289674  T

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Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 193
Target Start/End: Original strand, 24068125 - 24068176
Alignment:
Q  142 ttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    ||||||| |||||||| ||||||||||||||||| |  ||||||||||||||    
T  24068125 ttaatccggttaaataactatataaatttaatctaagcaccgagttatctaa 24068176  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 31504647 - 31504723
Alignment:
Q  114 aagtgaacgagtcac-gattaaatctaatttaatccagttaaatagctatataaatttaatcttaagaccgagttatc 190  Q
    |||||| |||||||| |||| ||||  ||||||||  ||||||||||||| |||||||||||| ||||||||| ||||    
T  31504647 aagtgaccgagtcaccgattcaatccgatttaatcg-gttaaatagctatttaaatttaatctcaagaccgagatatc 31504723  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 190
Target Start/End: Original strand, 31513273 - 31513349
Alignment:
Q  114 aagtgaacgagtcac-gattaaatctaatttaatccagttaaatagctatataaatttaatcttaagaccgagttatc 190  Q
    |||||| |||||||| |||| ||||  ||||||||  ||||||||||||| |||||||||||| ||||||||| ||||    
T  31513273 aagtgaccgagtcaccgattcaatccgatttaatcg-gttaaatagctatttaaatttaatctcaagaccgagatatc 31513349  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 193
Target Start/End: Original strand, 22351151 - 22351231
Alignment:
Q  114 aagtgaacgagtcac-gattaaatctaatttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    |||||| |||||||| |||| ||||  | ||| ||| |||||||| ||||||||||||||||| | ||| |||||||||||    
T  22351151 aagtgaccgagtcaccgattcaatccgagttattccggttaaataactatataaatttaatctaaggactgagttatctaa 22351231  T

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Target: scaffold0231 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0231
Description:

Target: scaffold0231; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 193
Target Start/End: Original strand, 10961 - 11012
Alignment:
Q  142 ttaatccagttaaatagctatataaatttaatcttaagaccgagttatctaa 193  Q
    ||||||| |||||||| ||||||||||||||||| | |||||||||||||||    
T  10961 ttaatccggttaaataactatataaatttaatctaaggaccgagttatctaa 11012  T

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