View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3526_low_38 (Length: 246)

Name: NF3526_low_38
Description: NF3526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3526_low_38
NF3526_low_38
[»] chr7 (13 HSPs)
chr7 (1-239)||(22912931-22913169)
chr7 (1-239)||(22897532-22897770)
chr7 (16-239)||(22804614-22804837)
chr7 (16-239)||(22888576-22888799)
chr7 (16-204)||(22814305-22814493)
chr7 (16-204)||(22893231-22893419)
chr7 (16-239)||(22875206-22875429)
chr7 (16-204)||(22825536-22825724)
chr7 (16-204)||(22839330-22839518)
chr7 (16-204)||(22808898-22809086)
chr7 (16-204)||(22830309-22830497)
chr7 (16-204)||(22879870-22880058)
chr7 (152-204)||(22857852-22857904)
[»] chr1 (1 HSPs)
chr1 (16-204)||(21151248-21151436)


Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-128; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 22912931 - 22913169
Alignment:
Q  1 gtaatcgtagacaagaagtaactcgccttttcgcctgcagtagccgagaagtggaacgagatttctatgacgaggacgacctatactaacaatttccgcg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  22912931 gtaatcgtagacaagaagtaactcgccttttcgcctgcagtagccgagaagtggaacgagatttctatgacgaagacgacctatactaacaatttccgcg 22913030  T
Q  101 acgaattccttcatcccttgtcttgattcatgtgaaactctcttcacggctacctcgagttttgaaatcggcatcacacctttgtagactctaccaaatc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22913031 acgaattccttcatcccttgtcttgattcatgtgaaactctcttcacggctacctcgagttttgaaatcggcatcacacctttgtagactctaccaaatc 22913130  T
Q  201 cacctgttcctaatagctccttctccttgaatccctttg 239  Q
    ||||||||||||||||||||||||||||||| |||||||    
T  22913131 cacctgttcctaatagctccttctccttgaaaccctttg 22913169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 22897532 - 22897770
Alignment:
Q  1 gtaatcgtagacaagaagtaactcgccttttcgcctgcagtagccgagaagtggaacgagatttctatgacgaggacgacctatactaacaatttccgcg 100  Q
    |||||| ||||| ||||| ||||| |||||||||||||| ||||||||||||||||| ||||| ||||||||| ||||||| ||||||||||||||||      
T  22897532 gtaatcatagaccagaagcaactcaccttttcgcctgcaatagccgagaagtggaacaagattcctatgacgaagacgaccgatactaacaatttccgac 22897631  T
Q  101 acgaattccttcatcccttgtcttgattcatgtgaaactctcttcacggctacctcgagttttgaaatcggcatcacacctttgtagactctaccaaatc 200  Q
    ||||||||| |||||||||||||||||||||||||||| |||||||| || ||||| ||||| |||   |||||||||||||||||||||||||||||||    
T  22897632 acgaattccctcatcccttgtcttgattcatgtgaaaccctcttcactgcaacctcaagtttggaacctggcatcacacctttgtagactctaccaaatc 22897731  T
Q  201 cacctgttcctaatagctccttctccttgaatccctttg 239  Q
    ||||   |||||||||  |||| |||||||| |||||||    
T  22897732 caccaactcctaatagacccttttccttgaaaccctttg 22897770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 16 - 239
Target Start/End: Original strand, 22804614 - 22804837
Alignment:
Q  16 aagtaactcgccttttcgcctgcagtagccgagaagtggaacgagatttctatgacgaggacgacctatactaacaatttccgcgacgaattccttcatc 115  Q
    ||||||||||| |||||||||||| |||||   |||| |||| ||||| || || ||| ||||||| ||||||||||||||||  || |||||| |||||    
T  22804614 aagtaactcgctttttcgcctgcaatagccataaagttgaacaagattcctgtgccgaagacgaccgatactaacaatttccgacacaaattccctcatc 22804713  T
Q  116 ccttgtcttgattcatgtgaaactctcttcacggctacctcgagttttgaaatcggcatcacacctttgtagactctaccaaatccacctgttcctaata 215  Q
    ||||||||||||||||| || || || ||||| || ||||| ||||| ||| | ||||||||||||||||| |||||||||||||||||   ||| ||||    
T  22804714 ccttgtcttgattcatgagacacccttttcacagcaacctcaagtttggaacttggcatcacacctttgtatactctaccaaatccaccaactcccaata 22804813  T
Q  216 gctccttctccttgaatccctttg 239  Q
    || |||| ||| |||| |||||||    
T  22804814 gccccttttccctgaaaccctttg 22804837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 16 - 239
Target Start/End: Original strand, 22888576 - 22888799
Alignment:
Q  16 aagtaactcgccttttcgcctgcagtagccgagaagtggaacgagatttctatgacgaggacgacctatactaacaatttccgcgacgaattccttcatc 115  Q
    ||||||||||| |||||||||||| |||||  ||||| |||| ||||| || || ||| ||||||| ||||||||||||||||  || |||||| |||||    
T  22888576 aagtaactcgctttttcgcctgcaatagccatgaagttgaacaagattcctgtgccgaagacgaccgatactaacaatttccgacacaaattccctcatc 22888675  T
Q  116 ccttgtcttgattcatgtgaaactctcttcacggctacctcgagttttgaaatcggcatcacacctttgtagactctaccaaatccacctgttcctaata 215  Q
    ||||||||||||||||| || || || ||||| || ||||| ||||| ||| |  | ||||||||||||||||||||||||||||||||   ||| ||||    
T  22888676 ccttgtcttgattcatgagacacccttttcacagcaacctcaagtttggaactttgtatcacacctttgtagactctaccaaatccaccaactcccaata 22888775  T
Q  216 gctccttctccttgaatccctttg 239  Q
    || |||| ||| |||| |||||||    
T  22888776 gccccttttccctgaaaccctttg 22888799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 16 - 204
Target Start/End: Original strand, 22814305 - 22814493
Alignment:
Q  16 aagtaactcgccttttcgcctgcagtagccgagaagtggaacgagatttctatgacgaggacgacctatactaacaatttccgcgacgaattccttcatc 115  Q
    ||||||||||| |||||||||||| |||||  ||||  |||| ||||| || || ||| ||||||| ||||||||||||||||  || |||||| |||||    
T  22814305 aagtaactcgctttttcgcctgcaatagccatgaagatgaacaagattcctgtgccgaagacgaccgatactaacaatttccgacacaaattccctcatc 22814404  T
Q  116 ccttgtcttgattcatgtgaaactctcttcacggctacctcgagttttgaaatcggcatcacacctttgtagactctaccaaatccacc 204  Q
    ||||||||||| || ||||| || || ||||| || ||||| ||||| ||| |||| ||||||||||||||||||||||||||||||||    
T  22814405 ccttgtcttgactcgtgtgacacccttttcacagcaacctcaagtttggaactcggtatcacacctttgtagactctaccaaatccacc 22814493  T

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Target: chr7; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 16 - 204
Target Start/End: Original strand, 22893231 - 22893419
Alignment:
Q  16 aagtaactcgccttttcgcctgcagtagccgagaagtggaacgagatttctatgacgaggacgacctatactaacaatttccgcgacgaattccttcatc 115  Q
    ||||||||||| |||||||||||| |||||  ||||| |||| ||||| || || ||| ||||||| ||||||||||||||||  || |||||| |||||    
T  22893231 aagtaactcgctttttcgcctgcaatagccatgaagttgaacaagattcctctgccgaagacgaccgatactaacaatttccgacacaaattccctcatc 22893330  T
Q  116 ccttgtcttgattcatgtgaaactctcttcacggctacctcgagttttgaaatcggcatcacacctttgtagactctaccaaatccacc 204  Q
    ||||||||||||||||| || || || ||||| || ||||| ||||| ||| | || | ||||||||||||||||||||||||||||||    
T  22893331 ccttgtcttgattcatgagacacccttttcacagcaacctcaagtttggaacttggtaacacacctttgtagactctaccaaatccacc 22893419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 16 - 239
Target Start/End: Original strand, 22875206 - 22875429
Alignment:
Q  16 aagtaactcgccttttcgcctgcagtagccgagaagtggaacgagatttctatgacgaggacgacctatactaacaatttccgcgacgaattccttcatc 115  Q
    ||||||||| | |||||||||||| |||||  ||||| |||| ||||| || || ||| ||||||| ||||||||||||||||  || |||||| |||||    
T  22875206 aagtaactccctttttcgcctgcaatagccatgaagttgaacaagattcctgtgtcgaagacgaccaatactaacaatttccgacacaaattccctcatc 22875305  T
Q  116 ccttgtcttgattcatgtgaaactctcttcacggctacctcgagttttgaaatcggcatcacacctttgtagactctaccaaatccacctgttcctaata 215  Q
    ||||||||||||||||| || || || ||||| || ||||| ||||| ||| |  | ||||||||||||||||||||||||||||||||   ||| ||||    
T  22875306 ccttgtcttgattcatgagacacccttttcacagcaacctcaagtttggaactttgtatcacacctttgtagactctaccaaatccaccaactcccaata 22875405  T
Q  216 gctccttctccttgaatccctttg 239  Q
    || |||| ||| |||| |||||||    
T  22875406 gccccttttccctgaaaccctttg 22875429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 204
Target Start/End: Original strand, 22825536 - 22825724
Alignment:
Q  16 aagtaactcgccttttcgcctgcagtagccgagaagtggaacgagatttctatgacgaggacgacctatactaacaatttccgcgacgaattccttcatc 115  Q
    ||||||||||| |||||||||| | |||||  ||||| |||| |||||  | || ||| ||||||| ||||||||||||||||  ||||||||| |||||    
T  22825536 aagtaactcgctttttcgcctgtaatagccatgaagttgaacaagattcttgtgccgaagacgaccgatactaacaatttccgacacgaattccctcatc 22825635  T
Q  116 ccttgtcttgattcatgtgaaactctcttcacggctacctcgagttttgaaatcggcatcacacctttgtagactctaccaaatccacc 204  Q
    ||||||||||||||||| || || || ||||| || ||||| | ||| ||| | || || |||||||||||||||||||||||||||||    
T  22825636 ccttgtcttgattcatgagagacccttttcacagcaacctcaattttggaacttggtatgacacctttgtagactctaccaaatccacc 22825724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 16 - 204
Target Start/End: Original strand, 22839330 - 22839518
Alignment:
Q  16 aagtaactcgccttttcgcctgcagtagccgagaagtggaacgagatttctatgacgaggacgacctatactaacaatttccgcgacgaattccttcatc 115  Q
    ||||||||| | |||||||||||| |||||  ||||| |||| ||||| || || ||| ||||||| ||||||||||||||||  || |||||| |||||    
T  22839330 aagtaactcactttttcgcctgcaatagccatgaagttgaacaagattcctgtgtcgaagacgaccgatactaacaatttccgacacaaattccctcatc 22839429  T
Q  116 ccttgtcttgattcatgtgaaactctcttcacggctacctcgagttttgaaatcggcatcacacctttgtagactctaccaaatccacc 204  Q
    |||||| |||||||||  || || || ||||| || ||||| ||||| ||| | || ||||||||||||||||||||||||||||||||    
T  22839430 ccttgttttgattcattagacacccttttcacagcaacctcaagtttggaacttggtatcacacctttgtagactctaccaaatccacc 22839518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 16 - 204
Target Start/End: Original strand, 22808898 - 22809086
Alignment:
Q  16 aagtaactcgccttttcgcctgcagtagccgagaagtggaacgagatttctatgacgaggacgacctatactaacaatttccgcgacgaattccttcatc 115  Q
    ||||||||| | |||||||||||| |||||  ||||| |||| ||||| || || ||| ||||||| ||||| ||||||||||  || |||||| |||||    
T  22808898 aagtaactccctttttcgcctgcaatagccatgaagttgaacaagattcctgtgtcgaagacgaccgatactgacaatttccgacacaaattccctcatc 22808997  T
Q  116 ccttgtcttgattcatgtgaaactctcttcacggctacctcgagttttgaaatcggcatcacacctttgtagactctaccaaatccacc 204  Q
    ||||||||||||||||  || || || ||||| || ||||| ||||| ||| |  | ||||||||||||||||||||||||||||||||    
T  22808998 ccttgtcttgattcattagacacccttttcacagcaacctcaagtttggaactttgtatcacacctttgtagactctaccaaatccacc 22809086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 204
Target Start/End: Original strand, 22830309 - 22830497
Alignment:
Q  16 aagtaactcgccttttcgcctgcagtagccgagaagtggaacgagatttctatgacgaggacgacctatactaacaatttccgcgacgaattccttcatc 115  Q
    ||||||||||| |||||||||||| |||||   |||| | || ||||| || || ||| ||||||| ||||||||||||||||  ||||||||| | |||    
T  22830309 aagtaactcgctttttcgcctgcaatagccataaagttggacaagattcctgtgccgaagacgaccgatactaacaatttccgacacgaattcccttatc 22830408  T
Q  116 ccttgtcttgattcatgtgaaactctcttcacggctacctcgagttttgaaatcggcatcacacctttgtagactctaccaaatccacc 204  Q
    ||||||||||||||||| || || || ||||| || || |  ||||| ||| | || |||||||||||||||||| |||||||||||||    
T  22830409 ccttgtcttgattcatgagacacccttttcacagcaacttgaagtttggaacttggtatcacacctttgtagactttaccaaatccacc 22830497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 16 - 204
Target Start/End: Original strand, 22879870 - 22880058
Alignment:
Q  16 aagtaactcgccttttcgcctgcagtagccgagaagtggaacgagatttctatgacgaggacgacctatactaacaatttccgcgacgaattccttcatc 115  Q
    ||||||||||| |||||| || || |||||  ||||| |||| ||||| || || | | ||||||| ||||| |||||||||   || |||||| |||||    
T  22879870 aagtaactcgctttttcgtctacaatagccatgaagtcgaacaagattcctgtgccaaagacgaccaatactgacaatttcccgcacaaattccctcatc 22879969  T
Q  116 ccttgtcttgattcatgtgaaactctcttcacggctacctcgagttttgaaatcggcatcacacctttgtagactctaccaaatccacc 204  Q
    ||||||||||||||||| || || || ||||| || ||||| |||||  || | || ||||||||||||||||||||||||||||||||    
T  22879970 ccttgtcttgattcatgagacacccttttcacagcaacctcaagtttgaaacttggtatcacacctttgtagactctaccaaatccacc 22880058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 204
Target Start/End: Original strand, 22857852 - 22857904
Alignment:
Q  152 acctcgagttttgaaatcggcatcacacctttgtagactctaccaaatccacc 204  Q
    ||||| ||||| ||| | || ||||||||||||||||||||||||||||||||    
T  22857852 acctcaagtttggaatttggtatcacacctttgtagactctaccaaatccacc 22857904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 16 - 204
Target Start/End: Complemental strand, 21151436 - 21151248
Alignment:
Q  16 aagtaactcgccttttcgcctgcagtagccgagaagtggaacgagatttctatgacgaggacgacctatactaacaatttccgcgacgaattccttcatc 115  Q
    ||||||||||| |||||||||||| |||||   |||| |||| ||||| || || ||| ||||||| ||||||||||||||||  ||||||||| | |||    
T  21151436 aagtaactcgctttttcgcctgcaatagccataaagttgaacaagattcctgtgccgaagacgaccaatactaacaatttccgacacgaattcccttatc 21151337  T
Q  116 ccttgtcttgattcatgtgaaactctcttcacggctacctcgagttttgaaatcggcatcacacctttgtagactctaccaaatccacc 204  Q
    ||||||||||||||||| || || || ||||| || || || ||||| ||| |||| ||||||||||||||||||||||||||||||||    
T  21151336 ccttgtcttgattcatgagacacccttttcacagcaacttcaagtttggaactcggtatcacacctttgtagactctaccaaatccacc 21151248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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