View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3526_low_44 (Length: 235)

Name: NF3526_low_44
Description: NF3526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3526_low_44
NF3526_low_44
[»] chr2 (7 HSPs)
chr2 (42-235)||(2350090-2350283)
chr2 (45-223)||(2326078-2326256)
chr2 (42-226)||(2329790-2329974)
chr2 (80-234)||(2302558-2302712)
chr2 (54-235)||(2292913-2293094)
chr2 (54-235)||(2320233-2320414)
chr2 (54-232)||(2309244-2309422)


Alignment Details
Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 42 - 235
Target Start/End: Original strand, 2350090 - 2350283
Alignment:
Q  42 ggtccaccgcatatccccatcatcacaagtatcctatggctccgaaaatcatcgtcccaactcgaaccttttatcaaaaccctccacaccaaatatggtc 141  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2350090 ggtccaccgcatatccccattatcacaagtatcctatggctccgaaaatcatcgtcccaactcgaaccttttatcaaaaccctccacaccaaatatggtc 2350189  T
Q  142 ctatcatcactctcaaaatcagttaccgaccttccattttcatctccgaccatactctcgcccaccacgctctcgttcaaaactcagccatctt 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2350190 ctatcatcactctcaaaatcagttaccgaccttccattttcatctccgaccatactctcgcccaccacgctctcgttcaaaactcagccatctt 2350283  T

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Target: chr2; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 45 - 223
Target Start/End: Original strand, 2326078 - 2326256
Alignment:
Q  45 ccaccgcatatccccatcatcacaagtatcctatggctccgaaaatcatcgtcccaactcgaaccttttatcaaaaccctccacaccaaatatggtccta 144  Q
    ||||| || ||||||||||||||||| || | |||||||||||||||||  |||||||| ||||||||| ||||||| |||||  ||||| |||||||||    
T  2326078 ccaccacacatccccatcatcacaagcatacaatggctccgaaaatcattttcccaacttgaaccttttctcaaaactctccatgccaaacatggtccta 2326177  T
Q  145 tcatcactctcaaaatcagttaccgaccttccattttcatctccgaccatactctcgcccaccacgctctcgttcaaaa 223  Q
    |||||| ||| || ||| | | | |||||||||||| ||||||||||| | |||| ||||||||||| |||||||||||    
T  2326178 tcatcaatcttaatatcggctccagaccttccatttacatctccgaccgtgctctggcccaccacgccctcgttcaaaa 2326256  T

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Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 42 - 226
Target Start/End: Original strand, 2329790 - 2329974
Alignment:
Q  42 ggtccaccgcatatccccatcatcacaagtatcctatggctccgaaaatcatcgtcccaactcgaaccttttatcaaaaccctccacaccaaatatggtc 141  Q
    |||||||| ||||| || ||||||||||| |||| |||||| ||||||||||   |||| || ||||||||| ||| ||| || ||  ||||| ||||||    
T  2329790 ggtccaccacatataccaatcatcacaagcatccaatggcttcgaaaatcattcgcccagcttgaaccttttctcagaactcttcatgccaaacatggtc 2329889  T
Q  142 ctatcatcactctcaaaatcagttaccgaccttccattttcatctccgaccatactctcgcccaccacgctctcgttcaaaactc 226  Q
    ||||||||| ||| || ||| |||  |||||||||||||||||| |||||| | |||| ||||||||||||||||||||||||||    
T  2329890 ctatcatcaatcttaatatcggttctcgaccttccattttcatcgccgaccgtgctctggcccaccacgctctcgttcaaaactc 2329974  T

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Target: chr2; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 80 - 234
Target Start/End: Original strand, 2302558 - 2302712
Alignment:
Q  80 gctccgaaaatcatcgtcccaactcgaaccttttatcaaaaccctccacaccaaatatggtcctatcatcactctcaaaatcagttaccgaccttccatt 179  Q
    |||||||||| |||| |||||||| ||||||||| ||||||| |||||  ||||| |||||||||||||||||||| | ||| |||  ||||||||||||    
T  2302558 gctccgaaaaccatcctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcactctccacatcggttctcgaccttccatt 2302657  T
Q  180 ttcatctccgaccatactctcgcccaccacgctctcgttcaaaactcagccatct 234  Q
    ||||||   |||||| |||| |||||||| | ||||||||||||||||| |||||    
T  2302658 ttcatcgatgaccatgctctggcccaccatgttctcgttcaaaactcagacatct 2302712  T

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Target: chr2; HSP #5
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 54 - 235
Target Start/End: Original strand, 2292913 - 2293094
Alignment:
Q  54 atccccatcatcacaagtatcctatggctccgaaaatcatcgtcccaactcgaaccttttatcaaaaccctccacaccaaatatggtcctatcatcactc 153  Q
    ||||||||||||||||   ||| || ||||| |||||||   |||||||| ||||||||| ||||||| |||||  ||||| |||||||||||||||||     
T  2292913 atccccatcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcactg 2293012  T
Q  154 tcaaaatcagttaccgaccttccattttcatctccgaccatactctcgcccaccacgctctcgttcaaaactcagccatctt 235  Q
    || | ||| |||  |||||||||||||||||   |||||||||||| |||||||| | |||||||||||||||| |||||||    
T  2293013 tccatatcggttctcgaccttccattttcattaacgaccatactctggcccaccatgttctcgttcaaaactcatccatctt 2293094  T

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Target: chr2; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 54 - 235
Target Start/End: Original strand, 2320233 - 2320414
Alignment:
Q  54 atccccatcatcacaagtatcctatggctccgaaaatcatcgtcccaactcgaaccttttatcaaaaccctccacaccaaatatggtcctatcatcactc 153  Q
    ||||||||||||||||   ||| || ||||| |||||||   |||||||| ||||||||| ||||||| |||||  ||||| |||||||||||||||||     
T  2320233 atccccatcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcactg 2320332  T
Q  154 tcaaaatcagttaccgaccttccattttcatctccgaccatactctcgcccaccacgctctcgttcaaaactcagccatctt 235  Q
    || | ||| |||  ||||||||||||||||||  ||||||| |||| || ||||| | ||||||||||||||||||||||||    
T  2320333 tccatatcggttctcgaccttccattttcatcaacgaccatgctctggctcaccatgttctcgttcaaaactcagccatctt 2320414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 54 - 232
Target Start/End: Original strand, 2309244 - 2309422
Alignment:
Q  54 atccccatcatcacaagtatcctatggctccgaaaatcatcgtcccaactcgaaccttttatcaaaaccctccacaccaaatatggtcctatcatcactc 153  Q
    ||||||||||||||||   ||| || ||||| |||||||   |||||||| ||||||||| ||||||| |||||  ||||| ||||||||||||||| |     
T  2309244 atccccatcatcacaaacttccaattgctccaaaaatcaatctcccaacttgaaccttttctcaaaactctccatgccaaacatggtcctatcatcattg 2309343  T
Q  154 tcaaaatcagttaccgaccttccattttcatctccgaccatactctcgcccaccacgctctcgttcaaaactcagccat 232  Q
    || | ||| |||  | ||||||||||||||||  ||||||| |||| || ||||| | |||||||||||||||||||||    
T  2309344 tccatatcggttctcaaccttccattttcatcaacgaccatgctctggctcaccatgttctcgttcaaaactcagccat 2309422  T

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