View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3526_low_45 (Length: 231)
Name: NF3526_low_45
Description: NF3526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3526_low_45 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 42612709 - 42612940
Alignment:
| Q |
1 |
gttttgttttgggtatatataaaaccgaactgaaaaatatcaaatcacgttcaagtgggtccgtacgccgtagagtttagaagaatgatagtagtttctg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42612709 |
gttttgttttgggtatatataaaaccgaactgaaaaatatcaaatcacgttcaagtgggtccgtacgccgtagagtttagaagaatgatagtagtttctg |
42612808 |
T |
|
| Q |
101 |
ttgtttttgagggttaatagtacatgattcttatataagcttg-ttttttatgttcaaattacccctttactttaggttaattagatatggtgaaaaaat |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42612809 |
ttgtttttgagggttaatagtacatgattcttatataagcttgtttttttatgttcaaattacccctttactttaggttaattagatatggtgaaaaaat |
42612908 |
T |
|
| Q |
200 |
accactacaattctaatcttatacgtcaactt |
231 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
42612909 |
accactacaattctaatcttatacgtcaactt |
42612940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University