View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3526_low_5 (Length: 542)
Name: NF3526_low_5
Description: NF3526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3526_low_5 |
 | |
|
| [»] scaffold0249 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 481; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 11 - 523
Target Start/End: Complemental strand, 11168608 - 11168093
Alignment:
| Q |
11 |
acatcatcatgatcatactaaataacttgagctcctctacactacacgaaaattaacagtcacaggctccaatataattcataaattgcttttggttttt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11168608 |
acatcatcatgatcatactaaataacttgagctcctctacactacacgaaaattaacagtcacaggctccaatataattcataaattgcttttggttttt |
11168509 |
T |
|
| Q |
111 |
tagtgtatcaaaaaacaacatttatgaaggattgacagtgacaaatccttattcaagctcagtgatcgcattgatttatattcttctaaatccacgattg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11168508 |
tagtgtatcaaaaaacaacatttatgaaggattgacagtgacaaatccttattcaaactcagtgatcgcattgatttatattcttctaaatccacgattg |
11168409 |
T |
|
| Q |
211 |
tgatcacattttcaaaatatctgattgcttcctttttatcaaaa-atatttgaacttgctaaggaaagtcaatgctacaatttaggcattgtactttcta |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
11168408 |
tgatcacattttcaaaatatctgattgcttactttttatcaaaacatatttgaacttgctaaggaaagtccatgctacaatttaggcattgtactttcta |
11168309 |
T |
|
| Q |
310 |
ttctgtacaatgataattttacttaccaattggaaaatcaaaagggagatacatgttggatgcattgcaaatgagcttgataatcaactgtaataaattc |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
11168308 |
ttctgtacaatgataattttacttaccaattggaaaatcaaaagggagatacatgttggatgcattgcaaatgagcttgataatcaaatgtaataaattc |
11168209 |
T |
|
| Q |
410 |
agtgcaggtagaatgtaataattcattagtgcttaggaccttgcaacttctacttcactgtcgaataa--cccaagatatatatacctacacaaaagcat |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
11168208 |
agtgcaggtagaatgtaataattcattagtgcttaggaccttgcaacttctacttcactgtcgaataacccccaagatatatatacctacacaaaagcat |
11168109 |
T |
|
| Q |
508 |
cacaatctctataacc |
523 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
11168108 |
cacaatctctataacc |
11168093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 11 - 165
Target Start/End: Complemental strand, 11207352 - 11207198
Alignment:
| Q |
11 |
acatcatcatgatcatactaaataacttgagctcctctacactacacgaaaattaacagtcacaggctccaatataattcataaattgcttttggttttt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11207352 |
acatcatcatgatcatactaaataacttgagctcctctacactacacgaaaattaacagtcacaggctccaatataattcataaattgcttttggttttt |
11207253 |
T |
|
| Q |
111 |
tagtgtatcaaaaaacaacatttatgaaggattgacagtgacaaatccttattca |
165 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11207252 |
tagtgtatcaaaaaacaacatttatgaaggattgacagtgacaaatccttattca |
11207198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 61 - 102
Target Start/End: Original strand, 8743687 - 8743728
Alignment:
| Q |
61 |
aattaacagtcacaggctccaatataattcataaattgcttt |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8743687 |
aattaacagtcacaggctccaatataattcataaattgcttt |
8743728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 11 - 523
Target Start/End: Complemental strand, 13624011 - 13623496
Alignment:
| Q |
11 |
acatcatcatgatcatactaaataacttgagctcctctacactacacgaaaattaacagtcacaggctccaatataattcataaattgcttttggttttt |
110 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13624011 |
acatcatcatgatcatactcaataacttgacctcctctacactacatgaaaattaacagtcacaggctccaatataattcataaattgcttttggttttt |
13623912 |
T |
|
| Q |
111 |
tagtgtatcaaaaaacaacatttatgaaggattgacagtgacaaatccttattcaagctcagtgatcgcattgatttatattcttctaaatccacgattg |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
13623911 |
tagtgtatcaaaaaacaacatttatgaaggattgacagtgacaaatccttattcaagctcagcgatcgcattgatttatactcttctaaatccacgattg |
13623812 |
T |
|
| Q |
211 |
tgatcacattttcaaaatatctgattgcttcctttttatcaaaa-atatttgaacttgctaaggaaagtcaatgctacaa--tttaggcattgtactttc |
307 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
13623811 |
ttatcacattttcaaaatatctgattgcttcctttttatcaaaacatatttgaacttgctaaggaaagtccatgctacaatttttaggcattgtactttc |
13623712 |
T |
|
| Q |
308 |
tattctgtacaatgataattttacttaccaattggaaaatcaaaagggagatacatgttggatgcattgcaaatgagcttgataatcaactgtaataaat |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
13623711 |
tattctgtacaatgataattttacttaccaattggaaaatcaaaagggagatacatgttggatgcattgcaaatgagcttattaatcaagtgtaataaat |
13623612 |
T |
|
| Q |
408 |
tcagtgcaggtagaatgtaataattcattagtgcttaggaccttgcaacttctacttcactgtcgaataacccaagatatatatacctacacaaaagcat |
507 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
13623611 |
tcagtgcaggtataatgtaataattcattagtgcttaggaccttgcagcttctacttcactgtcgaataacccaagatatatatacctacacgaaagcat |
13623512 |
T |
|
| Q |
508 |
cacaatctctataacc |
523 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
13623511 |
cgcaatctctataacc |
13623496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0249 (Bit Score: 413; Significance: 0; HSPs: 1)
Name: scaffold0249
Description:
Target: scaffold0249; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 11 - 523
Target Start/End: Complemental strand, 19498 - 18988
Alignment:
| Q |
11 |
acatcatcatgatcatactaaataacttgagctcctctacactacacgaaaattaacagtcacaggctccaatataattcataaattgcttttggttttt |
110 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
19498 |
acatcatcatgatcatactcaataacttgagctccactacactacaccagaattaacagtcacaggctccgatataattcataaattgcttttggttttt |
19399 |
T |
|
| Q |
111 |
tagtgtatcaaaaaacaacatttatgaaggattgacagtgacaaatccttattcaagctcagtgatcgcattgatttatattcttctaaatccacgattg |
210 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |
|
|
| T |
19398 |
tagtgtatcaaaaaacaaaatttatgaaggattgacagtgacaaatccttattcaagctcagcaatcgcattgatttatactcttctaaatccacgattg |
19299 |
T |
|
| Q |
211 |
tgatcacattttcaaaatatctgattgcttcctttttatcaaaa-atatttgaacttgctaaggaaagtcaatgctacaatttaggcattgtactttcta |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
19298 |
tgatcacattttcaaaatatctgattgctttctttttatcaaaacatatttgaacttgctaaggaaagtccatgctacaatttaggcattgtactttcta |
19199 |
T |
|
| Q |
310 |
ttctgtacaatgataattttacttaccaattggaaaatcaaaagggagatacatgttggatgcattgcaaatgagcttgataatcaactgtaataaattc |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
19198 |
ttctgtacaatgataattttacttaccaattggaaaatcaaaagggagatacatgttggatgcattgcaaatgagcttgataatcaattgtaataaattc |
19099 |
T |
|
| Q |
410 |
agtgcaggtagaatgtaataattcattagtgcttaggaccttgcaacttctacttcactgtcgaataacccaag--atatatatacctacacaaaagcat |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||| || ||||||| |
|
|
| T |
19098 |
agtgcaggtagaatgtaataattcattagtgcttaggaccttgcagcttct-----actgtcgaataacccaagatatatatatacctgcaagaaagcat |
19004 |
T |
|
| Q |
508 |
cacaatctctataacc |
523 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
19003 |
cacaatctctataacc |
18988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 11 - 523
Target Start/End: Complemental strand, 41050566 - 41050065
Alignment:
| Q |
11 |
acatcatcatgatcatactaaataacttgagctcctctacactacacgaaaattaacagtcacaggctccaatataattcataaattgcttttggttttt |
110 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41050566 |
acatcatcatgatcatactcaataacttgagctccactacactacaccagaattaacagtcacaggctccaatataattcataaattgcttttggttttt |
41050467 |
T |
|
| Q |
111 |
tagtgtatcaaaaaacaacatttatgaaggattgacagtgacaaatccttattcaagctcagtgatcgcattgatttatattcttctaaatccacgattg |
210 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
41050466 |
tagtgtatcacaaaacaacatttatgaaggattgacagtgg--------------agctcagcgatcgcattgatttatactcttctaaatccacgattg |
41050381 |
T |
|
| Q |
211 |
tgatcacattttcaaaatatctgattgcttcctttttatcaaaa-atatttgaacttgctaaggaaagtcaatgctacaattt--aggcattgtactttc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
41050380 |
tgatcacattttcaaaatatctgattgcttcctttttatcaaaacatatttgaacttgctaaggaaagtccatgctacaatttttaggcattgtactttc |
41050281 |
T |
|
| Q |
308 |
tattctgtacaatgataattttacttaccaattggaaaatcaaaagggagatacatgttggatgcattgcaaatgagcttgataatcaactgtaataaat |
407 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
41050280 |
tattccgtacaatgataattttacttaccaattggaaaatcaaaagggagatacatgttggatgcattgcaaatgagcttgataatcaagtgtaataaat |
41050181 |
T |
|
| Q |
408 |
tcagtgcaggtagaatgtaataattcattagtgcttaggaccttgcaacttctacttcactgtcgaataacccaagatatatatacctacacaaaagcat |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
41050180 |
tcagtgcaggtagaatgtaataattcattagtgcttaggaccttgcagcttctacttcactgtcgaataacccaagatatatatacctgcacgaaagcat |
41050081 |
T |
|
| Q |
508 |
cacaatctctataacc |
523 |
Q |
| |
|
| |||| ||||||||| |
|
|
| T |
41050080 |
cgcaatttctataacc |
41050065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 376; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 11 - 523
Target Start/End: Original strand, 21889828 - 21890325
Alignment:
| Q |
11 |
acatcatcatgatcatactaaataacttgagctcctctacactacacgaaaattaacagtcacaggctccaatataattcataaattgcttttggttttt |
110 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21889828 |
acatcatcatgatcatactcaataacttgagctccactacactacaccagaattaacagtcacaggctccaatataattcataaattgcttttggttttt |
21889927 |
T |
|
| Q |
111 |
tagtgtatcaaaaaacaacatttatgaaggattgacagtgacaaatccttattcaagctcagtgatcgcattgatttatattcttctaaatccacgattg |
210 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| ||||||| |||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
21889928 |
tagtgtatctcaaaacaacatttatgaaggattgacagtgg--------------agctcagcgatcacattgatttatactcttctaaatccacgattg |
21890013 |
T |
|
| Q |
211 |
tgatcacattttcaaaatatctgattgcttcctttttatcaaaa-atatttgaacttgctaaggaaagtcaatgctacaatttaggcattgtactttcta |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |
|
|
| T |
21890014 |
tgatcacattttcaaaatatctgattgcttcctttttatcaaaacatatttgaacttgctaaggaaagtccatgctacaat--aggcattgtactttcta |
21890111 |
T |
|
| Q |
310 |
ttctgtacaatgataattttacttaccaattggaaaatcaaaagggagatacatgttggatgcattgcaaatgagcttgataatcaactgtaataaattc |
409 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
21890112 |
ttctgtacaatgataattttacttaccgattggaaaatcaaaagggagatacatgttggatgcattgcaaatgagcttgataatcaagtgtaataaattc |
21890211 |
T |
|
| Q |
410 |
agtgcaggtagaatgtaataattcattagtgcttaggaccttgcaacttctacttcactgtcgaataacccaagatatatatacctacacaaaagcatca |
509 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
|
|
| T |
21890212 |
agtgcaggtagaatgtaataattcattagtgcttaggaccttgcagcttctacttcactgtcgaataacccaagatatatatacctgcacgaaagcattg |
21890311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 39585272 - 39585228
Alignment:
| Q |
192 |
tcttctaaatccacgattgtgatcacattttcaaaatatctgatt |
236 |
Q |
| |
|
|||| |||||||| |||| |||||||||||||||||||| ||||| |
|
|
| T |
39585272 |
tcttttaaatccatgattttgatcacattttcaaaatatttgatt |
39585228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 133; Significance: 7e-69; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 343 - 523
Target Start/End: Original strand, 22616072 - 22616252
Alignment:
| Q |
343 |
aaaatcaaaagggagatacatgttggatgcattgcaaatgagcttgataatcaactgtaataaattcagtgcaggtagaatgtaataattcattagtgct |
442 |
Q |
| |
|
||||||| |||| |||||||||||||||||| | |||||||||||||||||||| || |||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
22616072 |
aaaatcagaaggaagatacatgttggatgcaatccaaatgagcttgataatcaagtgaaataaattcagtgcaggtagcatgtaatagttcattagtgct |
22616171 |
T |
|
| Q |
443 |
taggaccttgcaacttctacttcactgtcgaataacccaagatatatatacctacacaaaagcatcacaatctctataacc |
523 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||| |
|
|
| T |
22616172 |
taggaccttgcagcttctacttcactgtcgaataacccaagatatatatacctgcacgaaagcatcgcaatctctataacc |
22616252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 61 - 111
Target Start/End: Complemental strand, 1974904 - 1974854
Alignment:
| Q |
61 |
aattaacagtcacaggctccaatataattcataaattgcttttggtttttt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
1974904 |
aattaacagtcacaggctccaatataattcataaattgctttggatttttt |
1974854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 444 - 495
Target Start/End: Complemental strand, 39645256 - 39645205
Alignment:
| Q |
444 |
aggaccttgcaacttctacttcactgtcgaataacccaagatatatatacct |
495 |
Q |
| |
|
||||||||||| |||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
39645256 |
aggaccttgcagcttctacttcgctgtcgaatagcccaagatatatatacct |
39645205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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