View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3526_low_6 (Length: 528)
Name: NF3526_low_6
Description: NF3526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3526_low_6 |
 | |
|
| [»] scaffold0249 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 439; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 439; E-Value: 0
Query Start/End: Original strand, 11 - 509
Target Start/End: Complemental strand, 41050566 - 41050065
Alignment:
| Q |
11 |
acatcatcatgatcatactcaataacttgagctccactacactacaccagaattaacagtcacaggctccaatataattcataaattgcttttggttttt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41050566 |
acatcatcatgatcatactcaataacttgagctccactacactacaccagaattaacagtcacaggctccaatataattcataaattgcttttggttttt |
41050467 |
T |
|
| Q |
111 |
tagtgtatcaaaaaacaacatttatgaaggattgacagtggagctcagcgatcacattgatttatactcttctaaagccacgattgtgatcacattttca |
210 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
41050466 |
tagtgtatcacaaaacaacatttatgaaggattgacagtggagctcagcgatcgcattgatttatactcttctaaatccacgattgtgatcacattttca |
41050367 |
T |
|
| Q |
211 |
aaatatctgattgcttcctttttatcaaaa-atatttgaacttgctaaggaaagtcaatgctacaa--tttaggcattgtactttctattctgtacaatg |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
41050366 |
aaatatctgattgcttcctttttatcaaaacatatttgaacttgctaaggaaagtccatgctacaatttttaggcattgtactttctattccgtacaatg |
41050267 |
T |
|
| Q |
308 |
ataattttacttaccaattggaaaatcaaaagggagatacatgttggatgcattgcaaatgagcttgataatcaactgtaataaattcagtgcaggtaga |
407 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
41050266 |
ataattttacttaccaattggaaaatcaaaagggagatacatgttggatgcattgcaaatgagcttgataatcaagtgtaataaattcagtgcaggtaga |
41050167 |
T |
|
| Q |
408 |
atgtaataattcattagtgcttaggaccttgcaacttctacttcactgtcgaataacccaagatatatatacctacacaaaagcatcacaatctctataa |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||| ||||||| |
|
|
| T |
41050166 |
atgtaataattcattagtgcttaggaccttgcagcttctacttcactgtcgaataacccaagatatatatacctgcacgaaagcatcgcaatttctataa |
41050067 |
T |
|
| Q |
508 |
cc |
509 |
Q |
| |
|
|| |
|
|
| T |
41050066 |
cc |
41050065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 11 - 509
Target Start/End: Original strand, 21889828 - 21890325
Alignment:
| Q |
11 |
acatcatcatgatcatactcaataacttgagctccactacactacaccagaattaacagtcacaggctccaatataattcataaattgcttttggttttt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21889828 |
acatcatcatgatcatactcaataacttgagctccactacactacaccagaattaacagtcacaggctccaatataattcataaattgcttttggttttt |
21889927 |
T |
|
| Q |
111 |
tagtgtatcaaaaaacaacatttatgaaggattgacagtggagctcagcgatcacattgatttatactcttctaaagccacgattgtgatcacattttca |
210 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
21889928 |
tagtgtatctcaaaacaacatttatgaaggattgacagtggagctcagcgatcacattgatttatactcttctaaatccacgattgtgatcacattttca |
21890027 |
T |
|
| Q |
211 |
aaatatctgattgcttcctttttatcaaaa-atatttgaacttgctaaggaaagtcaatgctacaatttaggcattgtactttctattctgtacaatgat |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
21890028 |
aaatatctgattgcttcctttttatcaaaacatatttgaacttgctaaggaaagtccatgctacaa--taggcattgtactttctattctgtacaatgat |
21890125 |
T |
|
| Q |
310 |
aattttacttaccaattggaaaatcaaaagggagatacatgttggatgcattgcaaatgagcttgataatcaactgtaataaattcagtgcaggtagaat |
409 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
21890126 |
aattttacttaccgattggaaaatcaaaagggagatacatgttggatgcattgcaaatgagcttgataatcaagtgtaataaattcagtgcaggtagaat |
21890225 |
T |
|
| Q |
410 |
gtaataattcattagtgcttaggaccttgcaacttctacttcactgtcgaataacccaagatatatatacctacacaaaagcatcacaatctctataacc |
509 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||| |
|
|
| T |
21890226 |
gtaataattcattagtgcttaggaccttgcagcttctacttcactgtcgaataacccaagatatatatacctgcacgaaagcattgcaatctctataacc |
21890325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 398; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 11 - 509
Target Start/End: Complemental strand, 11168608 - 11168093
Alignment:
| Q |
11 |
acatcatcatgatcatactcaataacttgagctccactacactacaccagaattaacagtcacaggctccaatataattcataaattgcttttggttttt |
110 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11168608 |
acatcatcatgatcatactaaataacttgagctcctctacactacacgaaaattaacagtcacaggctccaatataattcataaattgcttttggttttt |
11168509 |
T |
|
| Q |
111 |
tagtgtatcaaaaaacaacatttatgaaggattgacagtgg--------------agctcagcgatcacattgatttatactcttctaaagccacgattg |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | ||||| |||| |||||||||||| ||||||||| ||||||||| |
|
|
| T |
11168508 |
tagtgtatcaaaaaacaacatttatgaaggattgacagtgacaaatccttattcaaactcagtgatcgcattgatttatattcttctaaatccacgattg |
11168409 |
T |
|
| Q |
197 |
tgatcacattttcaaaatatctgattgcttcctttttatcaaaa-atatttgaacttgctaaggaaagtcaatgctacaatttaggcattgtactttcta |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
11168408 |
tgatcacattttcaaaatatctgattgcttactttttatcaaaacatatttgaacttgctaaggaaagtccatgctacaatttaggcattgtactttcta |
11168309 |
T |
|
| Q |
296 |
ttctgtacaatgataattttacttaccaattggaaaatcaaaagggagatacatgttggatgcattgcaaatgagcttgataatcaactgtaataaattc |
395 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
11168308 |
ttctgtacaatgataattttacttaccaattggaaaatcaaaagggagatacatgttggatgcattgcaaatgagcttgataatcaaatgtaataaattc |
11168209 |
T |
|
| Q |
396 |
agtgcaggtagaatgtaataattcattagtgcttaggaccttgcaacttctacttcactgtcgaataa--cccaagatatatatacctacacaaaagcat |
493 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
11168208 |
agtgcaggtagaatgtaataattcattagtgcttaggaccttgcaacttctacttcactgtcgaataacccccaagatatatatacctacacaaaagcat |
11168109 |
T |
|
| Q |
494 |
cacaatctctataacc |
509 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
11168108 |
cacaatctctataacc |
11168093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 11 - 150
Target Start/End: Complemental strand, 11207352 - 11207213
Alignment:
| Q |
11 |
acatcatcatgatcatactcaataacttgagctccactacactacaccagaattaacagtcacaggctccaatataattcataaattgcttttggttttt |
110 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11207352 |
acatcatcatgatcatactaaataacttgagctcctctacactacacgaaaattaacagtcacaggctccaatataattcataaattgcttttggttttt |
11207253 |
T |
|
| Q |
111 |
tagtgtatcaaaaaacaacatttatgaaggattgacagtg |
150 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11207252 |
tagtgtatcaaaaaacaacatttatgaaggattgacagtg |
11207213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 8743679 - 8743728
Alignment:
| Q |
53 |
tacaccagaattaacagtcacaggctccaatataattcataaattgcttt |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8743679 |
tacaccagaattaacagtcacaggctccaatataattcataaattgcttt |
8743728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 11 - 509
Target Start/End: Complemental strand, 13624011 - 13623496
Alignment:
| Q |
11 |
acatcatcatgatcatactcaataacttgagctccactacactacaccagaattaacagtcacaggctccaatataattcataaattgcttttggttttt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13624011 |
acatcatcatgatcatactcaataacttgacctcctctacactacatgaaaattaacagtcacaggctccaatataattcataaattgcttttggttttt |
13623912 |
T |
|
| Q |
111 |
tagtgtatcaaaaaacaacatttatgaaggattgacagtgg--------------agctcagcgatcacattgatttatactcttctaaagccacgattg |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
13623911 |
tagtgtatcaaaaaacaacatttatgaaggattgacagtgacaaatccttattcaagctcagcgatcgcattgatttatactcttctaaatccacgattg |
13623812 |
T |
|
| Q |
197 |
tgatcacattttcaaaatatctgattgcttcctttttatcaaaa-atatttgaacttgctaaggaaagtcaatgctacaattt--aggcattgtactttc |
293 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
13623811 |
ttatcacattttcaaaatatctgattgcttcctttttatcaaaacatatttgaacttgctaaggaaagtccatgctacaatttttaggcattgtactttc |
13623712 |
T |
|
| Q |
294 |
tattctgtacaatgataattttacttaccaattggaaaatcaaaagggagatacatgttggatgcattgcaaatgagcttgataatcaactgtaataaat |
393 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |
|
|
| T |
13623711 |
tattctgtacaatgataattttacttaccaattggaaaatcaaaagggagatacatgttggatgcattgcaaatgagcttattaatcaagtgtaataaat |
13623612 |
T |
|
| Q |
394 |
tcagtgcaggtagaatgtaataattcattagtgcttaggaccttgcaacttctacttcactgtcgaataacccaagatatatatacctacacaaaagcat |
493 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
13623611 |
tcagtgcaggtataatgtaataattcattagtgcttaggaccttgcagcttctacttcactgtcgaataacccaagatatatatacctacacgaaagcat |
13623512 |
T |
|
| Q |
494 |
cacaatctctataacc |
509 |
Q |
| |
|
| |||||||||||||| |
|
|
| T |
13623511 |
cgcaatctctataacc |
13623496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0249 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: scaffold0249
Description:
Target: scaffold0249; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 11 - 509
Target Start/End: Complemental strand, 19498 - 18988
Alignment:
| Q |
11 |
acatcatcatgatcatactcaataacttgagctccactacactacaccagaattaacagtcacaggctccaatataattcataaattgcttttggttttt |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
19498 |
acatcatcatgatcatactcaataacttgagctccactacactacaccagaattaacagtcacaggctccgatataattcataaattgcttttggttttt |
19399 |
T |
|
| Q |
111 |
tagtgtatcaaaaaacaacatttatgaaggattgacagtgg--------------agctcagcgatcacattgatttatactcttctaaagccacgattg |
196 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
19398 |
tagtgtatcaaaaaacaaaatttatgaaggattgacagtgacaaatccttattcaagctcagcaatcgcattgatttatactcttctaaatccacgattg |
19299 |
T |
|
| Q |
197 |
tgatcacattttcaaaatatctgattgcttcctttttatcaaaa-atatttgaacttgctaaggaaagtcaatgctacaatttaggcattgtactttcta |
295 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
19298 |
tgatcacattttcaaaatatctgattgctttctttttatcaaaacatatttgaacttgctaaggaaagtccatgctacaatttaggcattgtactttcta |
19199 |
T |
|
| Q |
296 |
ttctgtacaatgataattttacttaccaattggaaaatcaaaagggagatacatgttggatgcattgcaaatgagcttgataatcaactgtaataaattc |
395 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
19198 |
ttctgtacaatgataattttacttaccaattggaaaatcaaaagggagatacatgttggatgcattgcaaatgagcttgataatcaattgtaataaattc |
19099 |
T |
|
| Q |
396 |
agtgcaggtagaatgtaataattcattagtgcttaggaccttgcaacttctacttcactgtcgaataacccaag--atatatatacctacacaaaagcat |
493 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||| || ||||||| |
|
|
| T |
19098 |
agtgcaggtagaatgtaataattcattagtgcttaggaccttgcagcttct-----actgtcgaataacccaagatatatatatacctgcaagaaagcat |
19004 |
T |
|
| Q |
494 |
cacaatctctataacc |
509 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
19003 |
cacaatctctataacc |
18988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 133; Significance: 6e-69; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 329 - 509
Target Start/End: Original strand, 22616072 - 22616252
Alignment:
| Q |
329 |
aaaatcaaaagggagatacatgttggatgcattgcaaatgagcttgataatcaactgtaataaattcagtgcaggtagaatgtaataattcattagtgct |
428 |
Q |
| |
|
||||||| |||| |||||||||||||||||| | |||||||||||||||||||| || |||||||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
22616072 |
aaaatcagaaggaagatacatgttggatgcaatccaaatgagcttgataatcaagtgaaataaattcagtgcaggtagcatgtaatagttcattagtgct |
22616171 |
T |
|
| Q |
429 |
taggaccttgcaacttctacttcactgtcgaataacccaagatatatatacctacacaaaagcatcacaatctctataacc |
509 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||||| |
|
|
| T |
22616172 |
taggaccttgcagcttctacttcactgtcgaataacccaagatatatatacctgcacgaaagcatcgcaatctctataacc |
22616252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 111
Target Start/End: Complemental strand, 1974963 - 1974854
Alignment:
| Q |
13 |
atcatcatgatcatactcaataacttga----gctccactacactacaccagaattaa-------cagtcacaggctccaatataattcataaattgctt |
101 |
Q |
| |
|
|||||||||||||| ||||||||||| | ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
1974963 |
atcatcatgatcatgctcaataacttaattaagctcctctacactacaccagaattaagaattaacagtcacaggctccaatataattcataaattgctt |
1974864 |
T |
|
| Q |
102 |
ttggtttttt |
111 |
Q |
| |
|
| | |||||| |
|
|
| T |
1974863 |
tggatttttt |
1974854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 13 - 92
Target Start/End: Complemental strand, 56540529 - 56540450
Alignment:
| Q |
13 |
atcatcatgatcatactcaataacttgagctccactacactacaccagaattaacagtcacaggctccaatataattcat |
92 |
Q |
| |
|
|||||||||||||| ||||| ||||| | |||| ||| || |||||||||||||| ||||||| |||||||||| |||| |
|
|
| T |
56540529 |
atcatcatgatcatgctcaacaacttaaactcctttactcttcaccagaattaacattcacagggtccaatataactcat |
56540450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 430 - 481
Target Start/End: Complemental strand, 39645256 - 39645205
Alignment:
| Q |
430 |
aggaccttgcaacttctacttcactgtcgaataacccaagatatatatacct |
481 |
Q |
| |
|
||||||||||| |||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
39645256 |
aggaccttgcagcttctacttcgctgtcgaatagcccaagatatatatacct |
39645205 |
T |
|
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