View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3526_low_8 (Length: 517)
Name: NF3526_low_8
Description: NF3526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3526_low_8 |
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Alignment Details
Target: chr6 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 17 - 508
Target Start/End: Complemental strand, 9555343 - 9554852
Alignment:
| Q |
17 |
gattcatgctcagaacttcacaattactcaaattacacttctaagtgtatttatgtcaaaacacattctgattgtagatcaaaaggttacataaactatc |
116 |
Q |
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| T |
9555343 |
gattcatgctcagaacttcacaattactcaaattacacttctaagtgtatttatgtcaaaacacattctgattgtagatcaaaaggttacataaactatc |
9555244 |
T |
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| Q |
117 |
tccaaatcttttattgcaaccttggaaattcaccaattcttggtcacacactacttgttttatggctagtagttttattctatcttttagccgacacagc |
216 |
Q |
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| T |
9555243 |
ttcaaatcttttattgcaaccttggaaattcaccaattcttggtcacacactacttgttttatggctagtagttttattctatcttttagccgacacagc |
9555144 |
T |
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| Q |
217 |
ttcaaattactttcgcacatctctagaaggtttgtctaacatcttaagactttctccaaccatagctggtgtaacattactctctctaggtaatggtgct |
316 |
Q |
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| T |
9555143 |
ttcaaattacttttgcacatctctagaaggtttgtctaacatcttaagactttctccaaccatagctggtgtaacattactctctctaggtaatggtgct |
9555044 |
T |
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| Q |
317 |
cctgatttctttgctagtgttgtttctttcacaagttcaaacaatggcgcggtcggtttaaatagcattttggggggtgcattttttgtttccacagctg |
416 |
Q |
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| T |
9555043 |
cctgatttctttgctagtgttgtttctttcacaagttcaaacaatggcgcggtcggtttaaatagcattttggggggtgcattttttgtttccacagctg |
9554944 |
T |
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| Q |
417 |
ttttaggcataataagttttatagttagttccaataatgtttcagttgataaagctagtttcattagagatgtcattttcttccttttctct |
508 |
Q |
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| T |
9554943 |
ttttaggcataataagttttatagttagttccaataatgtttcagttgataaagctagtttcattagagatgtcattttcttccttttctct |
9554852 |
T |
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