View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3526_low_9 (Length: 503)
Name: NF3526_low_9
Description: NF3526
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3526_low_9 |
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| [»] scaffold1163 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 453; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 20 - 492
Target Start/End: Complemental strand, 5951770 - 5951298
Alignment:
| Q |
20 |
ccttcggcaactcatattactaggctacatcttctgttgcaagtagtgagccgctctaataattctgcgttaatactttctcttttgtggcaggaactcc |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
5951770 |
ccttcggcaactcatattactaggctacatcttctgttgcaagtagtgagccgctctaataattctgtgttaatactttctcttttgtggcaggaactcc |
5951671 |
T |
|
| Q |
120 |
ggagttcatggcaccagagttgtacgaagaagaatacaatgaacttgttgatgtttactcatttggcatgtgtgttttggaaattatgacatcagactat |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5951670 |
ggagttcatggcaccagagttgtacgaagaagaatacaatgaacttgttgatgtgtactcatttggcatgtgtgttttggaaattatgacatcagactat |
5951571 |
T |
|
| Q |
220 |
ccatatagtgagtgtactaacccagcgcaaatatacaagaaagtgacatcggtaaattaagaacttggtttaaagtttaatgatactagtaaactcgaaa |
319 |
Q |
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||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5951570 |
ccatatagtgagtgtactaacccggcacaaatatacaagaaagtgacatcggtaaattaagaacttggtttaaagtttaatgatactagtaaactcgaaa |
5951471 |
T |
|
| Q |
320 |
taatatataagtattttttctatctttcaatgttcagggtaagctaccagcaacacttttccgaattgaagatgcagaagcacgcgagtttattggaaaa |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
5951470 |
taatatataagtattttttctatctttcaatgttcagggtaagctaccagcaacacttttccgaattgaagatgcagaagcacgagagtttattggaaaa |
5951371 |
T |
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| Q |
420 |
tgcctagtaaatgcagcaaggagaccatcagcaaaagaactgttgcatgatccatttcttgtgtctgatgatg |
492 |
Q |
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| T |
5951370 |
tgcctagtaaatgcagcaaggagaccatcagcaaaagaactgttgcatgatccatttcttgtgtctgatgatg |
5951298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 102 - 277
Target Start/End: Complemental strand, 31951825 - 31951650
Alignment:
| Q |
102 |
ttttgtggcaggaactccggagttcatggcaccagagttgtacgaagaagaatacaatgaacttgttgatgtttactcatttggcatgtgtgttttggaa |
201 |
Q |
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||||||| |||||| ||||||||||||||||| || ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
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| T |
31951825 |
ttttgtgttaggaacaccggagttcatggcaccggaaatgtacgaggaagaatacaatgaacttgctgatgtttactcatttggcatgtgtgtattggaa |
31951726 |
T |
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| Q |
202 |
attatgacatcagactatccatatagtgagtgtactaacccagcgcaaatatacaagaaagtgacatcggtaaatt |
277 |
Q |
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| T |
31951725 |
atgctcacatctgattatccatatagtgaatgtactaatccagcacagatatacaagaaagtgacatcggtaaatt |
31951650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 9e-25; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 131 - 261
Target Start/End: Original strand, 28188578 - 28188708
Alignment:
| Q |
131 |
caccagagttgtacgaagaagaatacaatgaacttgttgatgtttactcatttggcatgtgtgttttggaaattatgacatcagactatccatatagtga |
230 |
Q |
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||||||| |||| || |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||| | | ||| |||||||| |
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| T |
28188578 |
caccagaactgtatgatgaagaatacaatgaacttgttgatgtgtactcatttggcatgtgtgctttggaaattattacatattattgtccttatagtga |
28188677 |
T |
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| Q |
231 |
gtgtactaacccagcgcaaatatacaagaaa |
261 |
Q |
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| T |
28188678 |
gtgtgctaacacggcgtagatatacaagaaa |
28188708 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 343 - 427
Target Start/End: Original strand, 28153837 - 28153921
Alignment:
| Q |
343 |
ctttcaatgttcagggtaagctaccagcaacacttttccgaattgaagatgcagaagcacgcgagtttattggaaaatgcctagt |
427 |
Q |
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| T |
28153837 |
cttttaatgttcaaggtatgctaccagcaacacttttctgatttgaagatgcaaaagcattggagtttattggaaaatgcctagt |
28153921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 110 - 203
Target Start/End: Complemental strand, 36630239 - 36630146
Alignment:
| Q |
110 |
caggaactccggagttcatggcaccagagttgtacgaagaagaatacaatgaacttgttgatgtttactcatttggcatgtgtgttttggaaat |
203 |
Q |
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| T |
36630239 |
caggtactccagaattcatggccccagagctttatgaggaagaatacaatgaacttgttgacgtatattcctttggcatgtgtatcttggaaat |
36630146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 194 - 292
Target Start/End: Complemental strand, 28507834 - 28507736
Alignment:
| Q |
194 |
ttttggaaattatgacatcagactatccatatagtgagtgtactaacccagcgcaaatatacaagaaagtgacatcggtaaattaagaacttggtttaa |
292 |
Q |
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|||||||||| || ||||| ||||||| ||||||||| ||||| || | || || |||||||||||||||| |||| | ||||| ||| ||||||||| |
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| T |
28507834 |
ttttggaaatgattacatctgactatctatatagtgaatgtacagactcggcacatatatacaagaaagtgaaatcgtttaattacgaatttggtttaa |
28507736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 343 - 485
Target Start/End: Complemental strand, 22396679 - 22396537
Alignment:
| Q |
343 |
ctttcaatgttcagggtaagctaccagcaacacttttccgaattgaagatgcagaagcacgcgagtttattggaaaatgcctagtaaatgcagcaaggag |
442 |
Q |
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|||| ||||||||| |||||||||||| | ||||| ||| || |||||||| |||| ||| |||||||||| |||||||||||| || |||| || | |
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| T |
22396679 |
cttttaatgttcagtgtaagctaccagaagcacttatcctgatagaagatgccgaagtacgagagtttattgaaaaatgcctagtgaaagcagtaaaaaa |
22396580 |
T |
|
| Q |
443 |
accatcagcaaaagaactgttgcatgatccatttcttgtgtct |
485 |
Q |
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||| | |||||| ||||| ||||||||||||||||||||||| |
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| T |
22396579 |
acctttggcaaaataactgctgcatgatccatttcttgtgtct |
22396537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 225 - 289
Target Start/End: Complemental strand, 22396811 - 22396747
Alignment:
| Q |
225 |
tagtgagtgtactaacccagcgcaaatatacaagaaagtgacatcggtaaattaagaacttggtt |
289 |
Q |
| |
|
||||||||||||| ||||||| | ||| ||||||||||||||||||||||| ||| ||||||| |
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| T |
22396811 |
tagtgagtgtactgacccagctctgttattcaagaaagtgacatcggtaaattcagatcttggtt |
22396747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 129 - 165
Target Start/End: Complemental strand, 22396882 - 22396846
Alignment:
| Q |
129 |
ggcaccagagttgtacgaagaagaatacaatgaactt |
165 |
Q |
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| T |
22396882 |
ggcaccagaattgtacgaagaagaataaaatgaactt |
22396846 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 164
Target Start/End: Complemental strand, 27092456 - 27092402
Alignment:
| Q |
110 |
caggaactccggagttcatggcaccagagttgtacgaagaagaatacaatgaact |
164 |
Q |
| |
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|||| ||||| ||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
27092456 |
caggtactccagagttcatggcaccagaattgtacgaagagaaatacaatgaact |
27092402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 110 - 164
Target Start/End: Original strand, 27185845 - 27185899
Alignment:
| Q |
110 |
caggaactccggagttcatggcaccagagttgtacgaagaagaatacaatgaact |
164 |
Q |
| |
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|||| ||||| ||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
27185845 |
caggtactccagagttcatggcaccagaattgtacgaagagaaatacaatgaact |
27185899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1163 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold1163
Description:
Target: scaffold1163; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 129 - 165
Target Start/End: Complemental strand, 2290 - 2254
Alignment:
| Q |
129 |
ggcaccagagttgtacgaagaagaatacaatgaactt |
165 |
Q |
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||||||||| ||||||||||||||||||||||||||| |
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| T |
2290 |
ggcaccagaattgtacgaagaagaatacaatgaactt |
2254 |
T |
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