View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3527_high_12 (Length: 322)
Name: NF3527_high_12
Description: NF3527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3527_high_12 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 18 - 322
Target Start/End: Complemental strand, 31494153 - 31493849
Alignment:
| Q |
18 |
tatctgtgccctatcttcaattgccaaaaatttgcatttccaggctaaggaatttctgtaatgtatcaattgtagatcctcataagtcataattattgtg |
117 |
Q |
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| T |
31494153 |
tatctgtgccctatcttcaattgccaaaaatttgcatttccaggctaaggaatttctgtaatgtatcaattgtagatcctcataagtcataattattgtg |
31494054 |
T |
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| Q |
118 |
tatgctacaacnnnnnnnaatgtgttcaatgtttttcattggccagtcttcgctttttaattatgtatccaatgcttagatatgcctcacaaagatgctt |
217 |
Q |
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| T |
31494053 |
tatgctacaactttttttaatgtgttcaatgtttttcattggccagtcttcgctttttaattatgtatccaatgcttagatatgcctcacaaagatgctt |
31493954 |
T |
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| Q |
218 |
aaaatttgatatcctgtttaaggagttcatctgataatgaacaattaccaagtaataaaatacttctcatgatttgttatctactaaagtcatcttccca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
31493953 |
aaaatttgatatcctgtttaaggagttcatctgataatgaacaattaccaagtaataaaatacttctcatgatttgttatctactaaagtcatcttccaa |
31493854 |
T |
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| Q |
318 |
attct |
322 |
Q |
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| T |
31493853 |
attct |
31493849 |
T |
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