View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3527_high_14 (Length: 280)
Name: NF3527_high_14
Description: NF3527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3527_high_14 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 1 - 280
Target Start/End: Complemental strand, 2019503 - 2019223
Alignment:
| Q |
1 |
tagcattttcgtagatattgttcgtagataatcagtctgaaaagaaggaacaccagtatcaattaaataatcaatgatccatataattgaaacccaagtt |
100 |
Q |
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| T |
2019503 |
tagcattttcgtagatattgttcgtagataatcagtctgaaaagaaggaacaccagtatcaattaaataatcaatgatccatataattgaaacccaagtt |
2019404 |
T |
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| Q |
101 |
atctttgagaaatagatatgaaagagaatatgag-gggaatttgaatattcttcattgatcgtcgtttagtaatgattacaggatgattggtatttatag |
199 |
Q |
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| T |
2019403 |
atctttgagaaatagatatgaaagagaatatgagagggaatctgaatattcttcattgatcaacgtttagtaatgattacaggatgattggtatttatag |
2019304 |
T |
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| Q |
200 |
aggtcaaatccctctaactgatttgattccgttagttagaaatctctcttagactagctagatgtgagagctgttattcta |
280 |
Q |
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| T |
2019303 |
aggtcaaatccctctaactgatttgattcagttagttagaaatctctcttagactaggtagatgtgagagctgttattcta |
2019223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 2022111 - 2021999
Alignment:
| Q |
1 |
tagcattttcgtagatattgttcgtagataatcagtctgaaaagaaggaacaccagtatc-aattaaataatcaatgatccatataattgaaacccaagt |
99 |
Q |
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| T |
2022111 |
tagcattttcgtagatatttttcgtagataatcagactgaaaagaaggaacaccagtatcgagttaaataatcgatgttcaatacagtagaaacctaagc |
2022012 |
T |
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| Q |
100 |
tatctttgagaaa |
112 |
Q |
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| T |
2022011 |
tatctttgagaaa |
2021999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 2036232 - 2036138
Alignment:
| Q |
1 |
tagcattttcgtagatattgttcgtagataatcagtctgaaaagaaggaacaccagtatc-aattaaataatcaatgatccatataattgaaacc |
94 |
Q |
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| T |
2036232 |
tagcattttcatagatatttttcgtagataatcagactgaaaagaaggaacaccagtatcgagttaaataatcgatgttcaatatagtagaaacc |
2036138 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 4 - 112
Target Start/End: Complemental strand, 1990534 - 1990425
Alignment:
| Q |
4 |
cattttcgtagatattgttcgtagataatcagtctgaaaagaaggaacaccagtatcaa-ttaaataatcaatgatccatataattgaaacccaagttat |
102 |
Q |
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| T |
1990534 |
cattttcaaagatatttttcgcaaataatcagactgaaaagaaggaacaccagtatcaagttaaataatcgatgttcaatatagtagaaacctaagctat |
1990435 |
T |
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| Q |
103 |
ctttgagaaa |
112 |
Q |
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|||||||||| |
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| T |
1990434 |
ctttgagaaa |
1990425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 190 - 237
Target Start/End: Complemental strand, 2021940 - 2021893
Alignment:
| Q |
190 |
gtatttatagaggtcaaatccctctaactgatttgattccgttagtta |
237 |
Q |
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| T |
2021940 |
gtatctataaaggtcaaatccctctaacttatttgattcagttagtta |
2021893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 25 - 106
Target Start/End: Original strand, 48204659 - 48204741
Alignment:
| Q |
25 |
tagataatcagtctgaaaagaaggaacaccagtatc-aattaaataatcaatgatccatataattgaaacccaagttatcttt |
106 |
Q |
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| T |
48204659 |
tagataatcagactgaaaagaaggaacaccagtatcgagttaaataatcgatgttcaatacagtagaaacctaagctatcttt |
48204741 |
T |
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