View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3527_high_17 (Length: 255)
Name: NF3527_high_17
Description: NF3527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3527_high_17 |
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| [»] chr2 (2 HSPs) |
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| [»] scaffold1074 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 19 - 255
Target Start/End: Original strand, 25048555 - 25048791
Alignment:
| Q |
19 |
gaacgcatatattaattttgaggattatcgacttaattgactgatctaagaaattagggttcatcccaaagtaggactgattcattttcgattagacaca |
118 |
Q |
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| T |
25048555 |
gaacgcatatattaattttgaggattatcgacttaattgactgatctaagaaattagggttcatcccaaagtaggactgattcattttcgattagataca |
25048654 |
T |
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| Q |
119 |
agtttggttcgggcttgatcaattaagagaagtccttgttaaatttgatgaatcattgatctattaagggagattatatatcgaaaattagttgttaacc |
218 |
Q |
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| T |
25048655 |
agtttggttcgggctcgatcaattaagagaagtccttgttaaatttgatgaatcattgatccattaagggagatcatatatcgaaaattagttgttaacc |
25048754 |
T |
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| Q |
219 |
gaatccgtaagaacggaaaaaattatgggtttttccc |
255 |
Q |
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| T |
25048755 |
gaatccgtaagaacggaaaaaattatgggtttttccc |
25048791 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 28 - 85
Target Start/End: Original strand, 23891773 - 23891830
Alignment:
| Q |
28 |
tattaattttgaggattatcgacttaattgactgatctaagaaattagggttcatccc |
85 |
Q |
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| T |
23891773 |
tattaattttgagaattatcgacttaattgacagatgtaaggaattagggttcatccc |
23891830 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 88
Target Start/End: Complemental strand, 33362412 - 33362352
Alignment:
| Q |
28 |
tattaattttgaggattatcgacttaattgactgatctaagaaattagggttcatcccaaa |
88 |
Q |
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| T |
33362412 |
tattaattttgagaattatcgaattaattgacagatgtaacgaattagggttcatcccaaa |
33362352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1074 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold1074
Description:
Target: scaffold1074; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 19 - 88
Target Start/End: Complemental strand, 708 - 639
Alignment:
| Q |
19 |
gaacgcatatattaattttgaggattatcgacttaattgactgatctaagaaattagggttcatcccaaa |
88 |
Q |
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| T |
708 |
gaacccatatatcaattttgagaattatcgacttaatcgacagatgtaaagaaatagggttcatcacaaa |
639 |
T |
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