View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3527_high_18 (Length: 251)
Name: NF3527_high_18
Description: NF3527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3527_high_18 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 13)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 15965525 - 15965767
Alignment:
| Q |
1 |
catcccagggatcaaactatcggttggatgatcaaaactttgccacaaaacaatgttcttctgaatatctttcaacacaaagttacctgtttccaacatg |
100 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| | |
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| T |
15965525 |
catcccagggagcaaactatcggttggatgatcaaaactttgccacaaaacaatgttcttctgaatatctttcaacacaaagttacctgtatccaacaag |
15965624 |
T |
|
| Q |
101 |
gtggcaacaatattact---attgttagaatgttgacgtgaagcatacaggattattggttcaccaattttggattcaattttgagtgcaccagattggt |
197 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
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|
| T |
15965625 |
gtggcaacaatattactactattgttagaatgttgacgtgaagcatacaggattattggttcaccgattttggattctattttgagtgcaccagattggt |
15965724 |
T |
|
| Q |
198 |
tcagtgataacactgcagaatccatatcaacaggttggtctct |
240 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
15965725 |
tcagtgataacactgcagaatccatgtcaacaggttggtctct |
15965767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 15937101 - 15936863
Alignment:
| Q |
1 |
catcccagggatcaaactatcggttggatgatcaaaactttgccacaaaacaatgttcttctgaatatctttcaacacaaagttacctgtttccaacatg |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||| |||||||||||||||||||||||| ||||||| | |
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|
| T |
15937101 |
catcccagggagcaaactatcggttggatgatcaaaactttgccacaacacagtgttcttctgagtatctttcaacacaaagttacctgaatccaacaag |
15937002 |
T |
|
| Q |
101 |
gtggcaacaatattactattgttagaatgttgacgtgaagcatacaggattattggttcaccaattttggattcaattttgagtgcaccagattggttca |
200 |
Q |
| |
|
||||| ||| || |||| | || || ||||| ||||||| || ||| ||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
15937001 |
gtggccacattagtacttctattcaaaggttgatgtgaagcgtaaagggttattggttttccaaatttggattcaattttgagtgcaccagattggttca |
15936902 |
T |
|
| Q |
201 |
gtgataacactgcagaatccatatcaacaggttggtctc |
239 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||| |
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|
| T |
15936901 |
gtgataacactgcagaatccatgtcaacaggttggtctc |
15936863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 19185285 - 19185094
Alignment:
| Q |
1 |
catcccagggatcaaactatcggttggatgatcaaaactttgccacaaaacaatgttcttctgaatatctttcaacacaaagttacctgtttccaacatg |
100 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| ||||||| | |
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|
| T |
19185285 |
catcctagggagcaaactatcggttggatgatcaaaactttgccacaacacaatgttcttctgaatatctttcaaaacaaagttacctgtatccaacaag |
19185186 |
T |
|
| Q |
101 |
gtggcaacaatattactattgttagaatgttgacgtgaagcatacaggattattggttcaccaattttggattcaattttgagtgcaccaga |
192 |
Q |
| |
|
|| ||||||||| |||| |||||| || ||||| |||||| ||||||||||||||||||||||||||||||||| |||||||| ||||||| |
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|
| T |
19185185 |
gttgcaacaatagtactgttgttaaaaggttgaggtgaagaatacaggattattggttcaccaattttggattctattttgagcacaccaga |
19185094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 5 - 241
Target Start/End: Original strand, 15984257 - 15984496
Alignment:
| Q |
5 |
ccagggatcaaactatcggttggatgatcaaaactttgccacaaaacaatgttcttctgaatatctttcaacacaaagttacctgtttccaacatggtgg |
104 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||| |
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|
| T |
15984257 |
ccagggagtaaactatcggttggatgatcaaaactttgccacaaaacaaagttcttctgaatatctttcaacacaaagttacctgtatccaacaacgtgg |
15984356 |
T |
|
| Q |
105 |
caacaatat---tactattgttagaatgttgacgtgaagcatacaggattattggttcaccaattttggattcaattttgagtgcaccagattggttcag |
201 |
Q |
| |
|
|||| |||| ||||||||||| || || | |||||||||||||||||||||||| |||||||||||||| ||||| || ||||||| | ||| || |
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|
| T |
15984357 |
caacgatataactactattgttaaaaggtggtggtgaagcatacaggattattggtttgccaattttggattctatttttagcacaccagagtagtttag |
15984456 |
T |
|
| Q |
202 |
tgataacactgcagaatccatatcaacaggttggtctctg |
241 |
Q |
| |
|
||||| | ||| |||| || ||||||||||||| |||| |
|
|
| T |
15984457 |
tgatagaattgctgaattaatgtcaacaggttggtttctg |
15984496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 15 - 192
Target Start/End: Complemental strand, 16004497 - 16004320
Alignment:
| Q |
15 |
aactatcggttggatgatcaaaactttgccacaaaacaatgttcttctgaatatctttcaacacaaagttacctgtttccaacatggtggcaacaatatt |
114 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| | || |||| ||||||||||||| | |
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|
| T |
16004497 |
aactatcagttggatgatcaaaactttgccacaaaacaatgttcttctcaatatctttcaacacaaagtcacctttatctaacaaggtggcaacaatagt |
16004398 |
T |
|
| Q |
115 |
actattgttagaatgttgacgtgaagcatacaggattattggttcaccaattttggattcaattttgagtgcaccaga |
192 |
Q |
| |
|
||||||||| || ||||| |||||| ||||||||||||||||||||| ||||||||||| |||||||| ||||||| |
|
|
| T |
16004397 |
actattgtttaaaggttgaggtgaagaatacaggattattggttcaccgattttggattctattttgagcacaccaga |
16004320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 5 - 206
Target Start/End: Original strand, 19151057 - 19151261
Alignment:
| Q |
5 |
ccagggatcaaactatcggttggatgatcaaaactttgccacaaaacaatgttcttctgaatatctttcaacacaaagttacctgtttccaacatggtgg |
104 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
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|
| T |
19151057 |
ccagggagtaaactgtcggttggatgatcaaaactttgccacaacacaatgttcttctgaatatctttcaacacaaagttacctgtatccaacaacgtgg |
19151156 |
T |
|
| Q |
105 |
caacaat---attactattgttagaatgttgacgtgaagcatacaggattattggttcaccaattttggattcaattttgagtgcaccagattggttcag |
201 |
Q |
| |
|
|||| || ||| ||||||||| || || || |||||||||||| ||||||||||| ||||||||||||||| ||||| || ||||||| | ||| || |
|
|
| T |
19151157 |
caacgatataatttctattgttaaaaggtggaggtgaagcatacaagattattggtttaccaattttggattctatttttagcacaccagagtagtttag |
19151256 |
T |
|
| Q |
202 |
tgata |
206 |
Q |
| |
|
||||| |
|
|
| T |
19151257 |
tgata |
19151261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 5 - 206
Target Start/End: Complemental strand, 15952988 - 15952784
Alignment:
| Q |
5 |
ccagggatcaaactatcggttggatgatcaaaactttgccacaaaacaatgttcttctgaatatctttcaacacaaagttacctgtttccaacatggtgg |
104 |
Q |
| |
|
||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |
|
|
| T |
15952988 |
ccagggagtaaactttcggttggatgatcaaaactttgccacaatacaatgttcttctgaatatctttcaacacaaagttacctgtatccaacaacgtgg |
15952889 |
T |
|
| Q |
105 |
caacaat---attactattgttagaatgttgacgtgaagcatacaggattattggttcaccaattttggattcaattttgagtgcaccagattggttcag |
201 |
Q |
| |
|
|||| || ||| ||||||||| || || | |||||||||||| ||||||||||| |||||||||||||| ||||| || ||||||| | ||| || |
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|
| T |
15952888 |
caacgatataatttctattgttaaaaggtggtggtgaagcatacatgattattggttttccaattttggattctatttttagcacaccagagtagtttag |
15952789 |
T |
|
| Q |
202 |
tgata |
206 |
Q |
| |
|
||||| |
|
|
| T |
15952788 |
tgata |
15952784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 15977487 - 15977590
Alignment:
| Q |
1 |
catcccagggatcaaactatcggttggatgatcaaaactttgccacaaaacaatgttcttctgaatatctttcaacacaaagttacctgtttccaacatg |
100 |
Q |
| |
|
||||||||||| |||||||||||||| ||||| ||||||||||||||| |||||||||||| |||||||||||| ||||||||||| || ||||||| | |
|
|
| T |
15977487 |
catcccagggagcaaactatcggttgaatgattaaaactttgccacaacacaatgttcttcagaatatctttcacaacaaagttaccagtatccaacaag |
15977586 |
T |
|
| Q |
101 |
gtgg |
104 |
Q |
| |
|
|||| |
|
|
| T |
15977587 |
gtgg |
15977590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 19146827 - 19147010
Alignment:
| Q |
1 |
catcccagggatcaaactatcggttggatgatcaaaactttgccacaaaacaatgttcttctgaatatctttcaacacaaagttacctgtttccaacatg |
100 |
Q |
| |
|
|||||| |||| |||| |||||||||||||||||||||||||| | ||||| | ||| |||||||||||| ||||||| ||||| | ||||||||| |
|
|
| T |
19146827 |
catcccggggaggaaacaatcggttggatgatcaaaactttgccgctaaacagtcttcatctgaatatcttgtaacacaacattaccattatccaacatg |
19146926 |
T |
|
| Q |
101 |
gtggcaacaatattactattgttagaatgttgacgtgaagcatacaggattattggttcaccaattttggattcaattttgagt |
184 |
Q |
| |
|
|||| | ||||| ||||||||||| ||| | | |||||||||||| ||||||||||| |||| || ||||||||||||||| |
|
|
| T |
19146927 |
gtggaagcaatagtactattgttaaaatatgtaggtgaagcatacaagattattggttttccaaattcagattcaattttgagt |
19147010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 159
Target Start/End: Complemental strand, 19188887 - 19188743
Alignment:
| Q |
14 |
aaactatcggttggatgatcaaaactttgccacaaaacaatgttcttctgaatatctttcaacacaaagttacctgtttccaacatggtggcaacaatat |
113 |
Q |
| |
|
|||||||| || |||||||||||||||| |||||| || | || ||||||||| ||||||||||||||||||||| |||| || |||||| |||||| |
|
|
| T |
19188887 |
aaactatcagtaggatgatcaaaacttttccacaataccttcgtcgtctgaatat-tttcaacacaaagttacctgtatccagcaaggtggctacaatag |
19188789 |
T |
|
| Q |
114 |
tactattgttagaatgttgacgtgaagcatacaggattattggttc |
159 |
Q |
| |
|
|||| | || || ||||| |||||||||| |||||||||||||| |
|
|
| T |
19188788 |
tacttctattcaaaagttgaggtgaagcatataggattattggttc |
19188743 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 184
Target Start/End: Original strand, 19126601 - 19126783
Alignment:
| Q |
1 |
catcccagggatcaaactatcggttggatgatcaaaactttgccacaaaacaatgttcttctgaatatctttcaacacaaagttacctgtttccaacatg |
100 |
Q |
| |
|
||||||||||| |||| |||| ||||||||||| ||||||||| | ||||| | ||| |||||||||||| ||||||| ||||| | ||||||| | |
|
|
| T |
19126601 |
catcccagggaggaaacaatcgcttggatgatcataactttgcctctaaacagtcttcatctgaatatcttgtaacacaacattaccattatccaacaag |
19126700 |
T |
|
| Q |
101 |
gtggcaacaatattactattgttagaatgttgacgtgaagcatacaggattattggttcaccaattttggattcaattttgagt |
184 |
Q |
| |
|
|||| | ||||| ||||||||||| ||| | | |||||||||||| || |||||||| |||| || ||||||||||||||| |
|
|
| T |
19126701 |
gtggaagcaatagtactattgttaaaatatgtaggtgaagcatacaaga-tattggttttccaaattcagattcaattttgagt |
19126783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 60 - 184
Target Start/End: Original strand, 15979747 - 15979871
Alignment:
| Q |
60 |
tctgaatatctttcaacacaaagttacctgtttccaacatggtggcaacaatattactattgttagaatgttgacgtgaagcatacaggattattggttc |
159 |
Q |
| |
|
|||||||||||| ||||| ||| ||||||| ||||||| ||||||| |||| ||||||||||| || || | |||||||||||| ||||||||||| |
|
|
| T |
15979747 |
tctgaatatcttgcaacaaaaaactacctgtatccaacaaggtggcagcaatggtactattgttaaaaggtgtaggtgaagcatacaagattattggttt |
15979846 |
T |
|
| Q |
160 |
accaattttggattcaattttgagt |
184 |
Q |
| |
|
|||| || ||||||||||||||| |
|
|
| T |
15979847 |
tccaaattcagattcaattttgagt |
15979871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 138 - 241
Target Start/End: Original strand, 15977596 - 15977699
Alignment:
| Q |
138 |
aagcatacaggattattggttcaccaattttggattcaattttgagtgcaccagattggttcagtgataacactgcagaatccatatcaacaggttggtc |
237 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| ||||| || |||||| | ||| ||||||| ||||| |||| || | |||||||||||| |
|
|
| T |
15977596 |
aagcatacaagattattggttcaccaattttggattctatttttagcataccagagttgtttagtgatagaactgctgaattgatgtgaacaggttggtc |
15977695 |
T |
|
| Q |
238 |
tctg |
241 |
Q |
| |
|
|||| |
|
|
| T |
15977696 |
tctg |
15977699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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