View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3527_high_19 (Length: 250)
Name: NF3527_high_19
Description: NF3527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3527_high_19 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 16 - 250
Target Start/End: Complemental strand, 6064054 - 6063820
Alignment:
| Q |
16 |
atgtgtatatgtgggttaaatagaagccaaatcactgacccatcagcaatcacttgttttatttagtagggttaggtacttgataatcaaagtatattat |
115 |
Q |
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| T |
6064054 |
atgtgtatatgtgggttaaatagaagccaaatcactaacccatcagcaatcacttgttttatttagtagggttaggtacttgataatcaaagtatattat |
6063955 |
T |
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| Q |
116 |
taagccatggtaatgacgacttcaacagtataatcacaatgaagggaacacaactagaagtttcaagaccacatgccaattgtatgccagcttaaatgtt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6063954 |
taagccatggtaatgacgacttcaacagtataatcacaatgaagggaacacaactagaagtttcaagaccacatgccaattgtatgccagcttaaatgtt |
6063855 |
T |
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| Q |
216 |
gaattaatgcattatgctcattgcgttagttccac |
250 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
6063854 |
gaattaatgcattatgctcattgcgttagttccac |
6063820 |
T |
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