View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3527_high_2 (Length: 457)
Name: NF3527_high_2
Description: NF3527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3527_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 39166591 - 39166215
Alignment:
| Q |
1 |
tgaactgcatggtttattggctggaaatgtcagcattgtcactggtgaaaatatcaagccttcttatggtggagatgacgaggcattcctacgaaaggtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39166591 |
tgaactgcatggtttattggctggaaatgtcagcattgtcactggtgaaaatatcaagccttcttatggtggagatgacgaggcattcctacgaaaggtt |
39166492 |
T |
|
| Q |
101 |
atcacacccctataccgagtaattgagaaggtgtgattttatctcacatggacattgttgtaatatctcaggtgcctatgttccctgtaatggtttgcaa |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
39166491 |
atcacacccatataccgagtaattgagaaggtgtgattttatttcacatggacattgttgtaatatctcaggtgcctatgttccctgtaatgatttgcaa |
39166392 |
T |
|
| Q |
201 |
aattgtaataaccatgttgatcattccaggaatctaagaaaagcagaaatggaaaggctgcacactcagcatggtccaactatgatgatctaaatgagta |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39166391 |
aattgtaataaccatgttgatcattccaggaatctaagaaaagcagaaatggaaaggcttcacactcagcatggtccaactatgatgatctaaatgagta |
39166292 |
T |
|
| Q |
301 |
tttttggtttgttttccttcagaattttattgctaaaattgacttggttcgtttcatttcgtcattcattacttgac |
377 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39166291 |
tttttggtttgttttccttcagaattttattgctaaaattgacttggttcgtttcatttcgtcattcattacttgac |
39166215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 402 - 448
Target Start/End: Complemental strand, 39166190 - 39166144
Alignment:
| Q |
402 |
caggtcacttgattgcttttctcttggatggcctatgcgtgatgatg |
448 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39166190 |
caggtcacttgattgcttttctcttggatggcctatgcgtgatgatg |
39166144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 110; Significance: 3e-55; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 244 - 377
Target Start/End: Complemental strand, 5539224 - 5539091
Alignment:
| Q |
244 |
cagaaatggaaaggctgcacactcagcatggtccaactatgatgatctaaatgagtatttttggtttgttttccttcagaattttattgctaaaattgac |
343 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
5539224 |
cagaaatggaaaggcttcacactcagcatggtgcaactatgatgatctaaatgagtatttttggtttgttttccttcagaattttattactaaaattgac |
5539125 |
T |
|
| Q |
344 |
ttggttcgtttcatttcgtcattcattacttgac |
377 |
Q |
| |
|
|||||| |||||||||| |||| ||||||||||| |
|
|
| T |
5539124 |
ttggtttgtttcatttcatcatgcattacttgac |
5539091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 402 - 448
Target Start/End: Complemental strand, 5539066 - 5539020
Alignment:
| Q |
402 |
caggtcacttgattgcttttctcttggatggcctatgcgtgatgatg |
448 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
5539066 |
caggtcacttgattgcttttctcttggatggcctataggtgatgatg |
5539020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 43964091 - 43963990
Alignment:
| Q |
1 |
tgaactgcatggtttattggctggaaatgtcagcattgtcactggtgaaaatatcaagccttcttatggtggagatgacgaggcattcctacgaaaggtt |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| ||||||||| | || |||||| |
|
|
| T |
43964091 |
tgaacttcatggtttattggctggaaatgtcagcattgttactggtgaaaatatcaaaccttcttatggtggtgatgatgaggcattcttgcgcaaggtt |
43963992 |
T |
|
| Q |
101 |
at |
102 |
Q |
| |
|
|| |
|
|
| T |
43963991 |
at |
43963990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 227 - 314
Target Start/End: Complemental strand, 43963868 - 43963781
Alignment:
| Q |
227 |
caggaatctaagaaaagcagaaatggaaaggctgcacactcagcatggtccaactatgatgatctaaatgagtatttttggtttgttt |
314 |
Q |
| |
|
|||||| || |||||||||||||||||| |||| | |||||||| |||| ||| || |||||||||||||||||||| ||||| |||| |
|
|
| T |
43963868 |
caggaagctgagaaaagcagaaatggaatggctcctcactcagcctggtgcaattacgatgatctaaatgagtatttctggttagttt |
43963781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 402 - 448
Target Start/End: Complemental strand, 43963681 - 43963635
Alignment:
| Q |
402 |
caggtcacttgattgcttttctcttggatggcctatgcgtgatgatg |
448 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
43963681 |
caggacacctgattgcttttctcttggatggcccatgcgtgatgatg |
43963635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University