View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3527_high_20 (Length: 246)

Name: NF3527_high_20
Description: NF3527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3527_high_20
NF3527_high_20
[»] chr8 (11 HSPs)
chr8 (17-246)||(15965284-15965513)
chr8 (48-246)||(16004523-16004721)
chr8 (30-246)||(15953004-15953220)
chr8 (30-246)||(19150825-19151041)
chr8 (78-246)||(15984073-15984241)
chr8 (17-229)||(15977267-15977468)
chr8 (30-173)||(15983928-15984071)
chr8 (58-245)||(19185298-19185483)
chr8 (103-191)||(15937174-15937262)
chr8 (202-246)||(19146771-19146815)
chr8 (202-246)||(19126545-19126589)


Alignment Details
Target: chr8 (Bit Score: 166; Significance: 6e-89; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 17 - 246
Target Start/End: Original strand, 15965284 - 15965513
Alignment:
Q  17 agtactcttcttcctcattagactcaacttcgacctcaaaatcttctccaggtatattctcaaatctattgtttttcattagttttccacttgtccaata 116  Q
    ||||||||||||||| ||||||| |||| | ||||||||| |||||||||| ||||| ||||||| |||||||| |||  ||||||||||||||||||||    
T  15965284 agtactcttcttccttattagacacaacattgacctcaaagtcttctccagatatatactcaaatgtattgtttatcagcagttttccacttgtccaata 15965383  T
Q  117 tactttttctctatgcttgatgaccaattcttttcttgtgggttcccactcaagcctgaatggaccagaagctgggtttgaatcgctaattcttgaaacc 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||    
T  15965384 tactttttctctatgcttgatgaccaattcttttcttgtgggttcccactcaagcctgaatgtaccagaagctgggcttgaatcgctaatgcttgaaacc 15965483  T
Q  217 agtgaccatttttcaccggttttatgattc 246  Q
    ||||||||||||||||| |||||| |||||    
T  15965484 agtgaccatttttcaccagttttacgattc 15965513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 48 - 246
Target Start/End: Complemental strand, 16004721 - 16004523
Alignment:
Q  48 gacctcaaaatcttctccaggtatattctcaaatctattgtttttcattagttttccacttgtccaatatactttttctctatgcttgatgaccaattct 147  Q
    ||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16004721 gacctcaaattcttctccacgtatattctcaaatctattgtttttcatcagttttccacttgtccaatatactttttctctatgcttgatgaccaattct 16004622  T
Q  148 tttcttgtgggttcccactcaagcctgaatggaccagaagctgggtttgaatcgctaattcttgaaaccagtgaccatttttcaccggttttatgattc 246  Q
    ||| ||||||||||||||||||||||||||||||||||||||||| ||||| | |||||   ||||||||||||||| |||||||| |||||| |||||    
T  16004621 tttattgtgggttcccactcaagcctgaatggaccagaagctgggattgaaccactaatgtatgaaaccagtgaccagttttcaccagttttacgattc 16004523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 30 - 246
Target Start/End: Complemental strand, 15953220 - 15953004
Alignment:
Q  30 ctcattagactcaacttcgacctcaaaatcttctccaggtatattctcaaatctattgtttttcattagttttccacttgtccaatatactttttctcta 129  Q
    ||||| |||| |||||| |||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  15953220 ctcatcagacacaactttgaccttcaaatcttctccaggtatattctcaaatctattgtttttcatcagttttccacttgtccaataaactttttctcta 15953121  T
Q  130 tgcttgatgaccaattcttttcttgtgggttcccactcaagcctgaatggaccagaagctgggtttgaatcgctaattcttgaaaccagtgaccattttt 229  Q
     ||||||| ||||||||||||||||||| |||||| ||||| ||||||||||||| ||   |  ||| ||| ||||||||||||||||||||||| ||||    
T  15953120 cgcttgataaccaattcttttcttgtggcttcccattcaagtctgaatggaccaggagtcagaattgtatcactaattcttgaaaccagtgaccagtttt 15953021  T
Q  230 caccggttttatgattc 246  Q
    |||| ||||||||||||    
T  15953020 caccagttttatgattc 15953004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 30 - 246
Target Start/End: Original strand, 19150825 - 19151041
Alignment:
Q  30 ctcattagactcaacttcgacctcaaaatcttctccaggtatattctcaaatctattgtttttcattagttttccacttgtccaatatactttttctcta 129  Q
    ||||| |||| |||||| |||||  ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  19150825 ctcatcagacacaactttgaccttgaaatcttctccaggtatattctcaaatctattgtttttcatcagttttccacttgtccaataaactttttctcta 19150924  T
Q  130 tgcttgatgaccaattcttttcttgtgggttcccactcaagcctgaatggaccagaagctgggtttgaatcgctaattcttgaaaccagtgaccattttt 229  Q
     ||||||| |||||||||||||| ||||  ||||| ||||| ||||||||||||| |||  |  ||||||| ||||| ||||||||||| ||||| ||||    
T  19150925 cgcttgataaccaattcttttctcgtggcctcccattcaagactgaatggaccaggagccagaattgaatcactaatgcttgaaaccagcgaccagtttt 19151024  T
Q  230 caccggttttatgattc 246  Q
    |||| |||||| |||||    
T  19151025 caccagttttacgattc 19151041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 78 - 246
Target Start/End: Original strand, 15984073 - 15984241
Alignment:
Q  78 aaatctattgtttttcattagttttccacttgtccaatatactttttctctatgcttgatgaccaattcttttcttgtgggttcccactcaagcctgaat 177  Q
    |||||||||||||||||| |||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||| |||||||||||||||||||    
T  15984073 aaatctattgtttttcatcagttttccacttgtccaataaactttttctctacgcttgataaccaattcttttcttgtggcttcccactcaagcctgaat 15984172  T
Q  178 ggaccagaagctgggtttgaatcgctaattcttgaaaccagtgaccatttttcaccggttttatgattc 246  Q
    ||||||| ||   |  ||| ||| ||||| ||||||||||| ||||| |||||||| |||||| |||||    
T  15984173 ggaccaggagacagaattgtatcactaatacttgaaaccagagaccagttttcaccagttttaagattc 15984241  T

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Target: chr8; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 17 - 229
Target Start/End: Original strand, 15977267 - 15977468
Alignment:
Q  17 agtactcttcttcctcattagactcaacttcgacctcaaaatcttctccaggtatattctcaaatctattgtttttcattagttttccacttgtccaata 116  Q
    |||||||||||| ||  | |||| |||||| |||||  ||||||||||||||||||| ||||||||||||||||           |||||||||||| ||    
T  15977267 agtactcttctttcttgtcagacacaactttgaccttgaaatcttctccaggtatatgctcaaatctattgttt-----------tccacttgtccagta 15977355  T
Q  117 tactttttctctatgcttgatgaccaattcttttcttgtgggttcccactcaagcctgaatggaccagaagctgggtttgaatcgctaattcttgaaacc 216  Q
     ||||||||||||||||||||| |||||||||||||||||| |||||||||||| ||||||||||| |  ||| |  ||||||||||||| ||||||||     
T  15977356 aactttttctctatgcttgatgtccaattcttttcttgtggcttcccactcaagtctgaatggacctgcggctagaattgaatcgctaatgcttgaaact 15977455  T
Q  217 agtgaccattttt 229  Q
    |||||||| ||||    
T  15977456 agtgaccagtttt 15977468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 30 - 173
Target Start/End: Original strand, 15983928 - 15984071
Alignment:
Q  30 ctcattagactcaacttcgacctcaaaatcttctccaggtatattctcaaatctattgtttttcattagttttccacttgtccaatatactttttctcta 129  Q
    ||||| |||| |||||| || | | ||||||| ||||| ||||| |  |||||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  15983928 ctcatcagacacaactttgatcacgaaatcttttccagttatatgcataaatctattgtttttcatcagttttccacttgtccaataaactttttctcta 15984027  T
Q  130 tgcttgatgaccaattcttttcttgtgggttcccactcaagcct 173  Q
     ||||||| ||||||||||||||||||| |||||||||||||||    
T  15984028 cgcttgataaccaattcttttcttgtggcttcccactcaagcct 15984071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 58 - 245
Target Start/End: Complemental strand, 19185483 - 19185298
Alignment:
Q  58 tcttctccaggtatattctcaaatctattgtttttcattagttttccacttgtccaatatactttttctctatgcttgatgaccaattcttttcttgtgg 157  Q
    |||| ||||| ||||| ||||||| ||||||||||||   ||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |  |||    
T  19185483 tcttttccagatatatactcaaatgtattgtttttca---gttttccacttctccaataaactttttctctatgcttgatgaccaattcttttatgttgg 19185387  T
Q  158 gttccc-actcaagcctgaatggaccagaagctgggtttgaatcgctaattcttgaaaccagtgaccatttttcaccggttttatgatt 245  Q
    |||||| | ||||||||||||||||||| |||  || ||| ||| || |||||||| | ||||||||| |||| ||| ||||| |||||    
T  19185386 gttcccaattcaagcctgaatggaccaggagcatggattgtatcactgattcttgataacagtgaccaattttgaccagttttgtgatt 19185298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 103 - 191
Target Start/End: Complemental strand, 15937262 - 15937174
Alignment:
Q  103 ccacttgtccaatatactttttctctatgcttgatgaccaattcttttcttgtgggttcccactcaagcctgaatggaccagaagctgg 191  Q
    |||||| |||| || ||||||||||||||||| ||||||||||| |||| | |||||||||| ||||||||||||||||||||||||||    
T  15937262 ccacttttccagtaaactttttctctatgcttaatgaccaattcctttcctatgggttcccaatcaagcctgaatggaccagaagctgg 15937174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 202 - 246
Target Start/End: Original strand, 19146771 - 19146815
Alignment:
Q  202 ctaattcttgaaaccagtgaccatttttcaccggttttatgattc 246  Q
    ||||||||||||||||||||||| |||||||  ||||||||||||    
T  19146771 ctaattcttgaaaccagtgaccagttttcacaagttttatgattc 19146815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 246
Target Start/End: Original strand, 19126545 - 19126589
Alignment:
Q  202 ctaattcttgaaaccagtgaccatttttcaccggttttatgattc 246  Q
    ||||| ||||||||||||||||| |||||||  ||||||||||||    
T  19126545 ctaatgcttgaaaccagtgaccagttttcacaagttttatgattc 19126589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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