View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3527_high_5 (Length: 393)
Name: NF3527_high_5
Description: NF3527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3527_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 374
Target Start/End: Original strand, 43895604 - 43895977
Alignment:
| Q |
1 |
aggaagatcaaaattgatgcctttgagtatgtttggatatttgttcataatcatgttgagactcacaccagaattgccaccaacatcaactagagtctcc |
100 |
Q |
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| T |
43895604 |
aggaagatcaaaattgatgcctttgagtatgtttggatatttgttcataatcatgttgagactcacaccagaattgccaccaacatcaactagagtctcc |
43895703 |
T |
|
| Q |
101 |
acacctttgaagccatcataattctccaacatttctctcatgtagggcaatgacatcccagacatggaagcataaaacaaactcatttcttctggtccct |
200 |
Q |
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| T |
43895704 |
acacctttgaagccatcataattctccaacatttccctcatgtagggcaatgacatcccagacatggaagcataaaacaaactcatttcttctggtccct |
43895803 |
T |
|
| Q |
201 |
tcgtgcaatatgcatatgctgcttctccgtgcagcttctcgaacggttccacagttggatcctccaccgcgtctcccaccaacggccatgctcgcaggta |
300 |
Q |
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| T |
43895804 |
tcgtgcaatatgcatatgctgcttctccgtgcagcttctcgaacggttccacagttggatcctccaccgcgtctcccaccaacggccatgctcgcaggta |
43895903 |
T |
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| Q |
301 |
cgggtcctgtacgtttgaannnnnnnnaggttatcagatgtactttgtcaacaaagttttgcatgagcttatac |
374 |
Q |
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| T |
43895904 |
cgggtcctgtacgtttgatttttttttaggttatcagatgtactttgtcaacaaagttttgcatgagcttatac |
43895977 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 308
Target Start/End: Original strand, 43907108 - 43907415
Alignment:
| Q |
1 |
aggaagatcaaaattgatgcctttgagtatgtttggatatttgttcataatcatgttgagactcacaccagaattgccaccaacatcaactagagtctcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||| ||| |
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| T |
43907108 |
aggaagatcaaaattgatgcctttgagtatgtttggatatttgttcataatcatattgagaatcacaccagaatttccaccaacatcaactagagattcc |
43907207 |
T |
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| Q |
101 |
acacctttgaagccatcataattctccaacatttctctcatgtagggcaatgacatcccagacatggaagcataaaacaaactcatttcttctggtccct |
200 |
Q |
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|||||||||||||||||||| |||||||||||||| |||||| ||||| |||||| |||||||||||||| ||||||||||||||||| ||||||| || |
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| T |
43907208 |
acacctttgaagccatcatacttctccaacatttcattcatgtggggcattgacattccagacatggaagcgtaaaacaaactcatttcatctggtctct |
43907307 |
T |
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| Q |
201 |
tcgtgcaatatgcatatgctgcttctccgtgcagcttctcgaacggttccacagttggatcctccaccgcgtctcccaccaacggccatgctcgcaggta |
300 |
Q |
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|| |||| |||||||||||| |||||||||| |||||||||||||| || |||||||||||||||||||| |||||||||| |||||||||||||||||| |
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| T |
43907308 |
tcatgcagtatgcatatgctccttctccgtgtagcttctcgaacggctcaacagttggatcctccaccgcctctcccaccagcggccatgctcgcaggta |
43907407 |
T |
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| Q |
301 |
cgggtcct |
308 |
Q |
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| |||||| |
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| T |
43907408 |
ctggtcct |
43907415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 332 - 372
Target Start/End: Original strand, 43907466 - 43907506
Alignment:
| Q |
332 |
tatcagatgtactttgtcaacaaagttttgcatgagcttat |
372 |
Q |
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|||||||||||||| | |||||||||||||||||||||||| |
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| T |
43907466 |
tatcagatgtacttcgacaacaaagttttgcatgagcttat |
43907506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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