View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3527_high_7 (Length: 369)
Name: NF3527_high_7
Description: NF3527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3527_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 212; Significance: 1e-116; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 3 - 218
Target Start/End: Complemental strand, 23447624 - 23447409
Alignment:
| Q |
3 |
agttatagaggaaatcaagtattgaaaattttagtctaaagatgagttaccatgaataattttaattgacccaacttgatcatggttcaagtttaggtgc |
102 |
Q |
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| T |
23447624 |
agttatagaggaaatcaagtattgaaaattttagtctaaagatgagttaccatgaataattttaattgacccaacttgatcatggttcaagtttagatgc |
23447525 |
T |
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| Q |
103 |
aaaaaatacaacttgtttcactgccttatcatagccagctttgtactgcaactcaattccactcttcaattcttcaatttcagccttcaacttctcaaca |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23447524 |
aaaaaatacaacttgtttcactgccttatcatagccagctttgtactgcaactcaattccactcttcaattcttcaatttcagccttcaacttctcaaca |
23447425 |
T |
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| Q |
203 |
ttaaccctgtgagcat |
218 |
Q |
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|||||||||||||||| |
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| T |
23447424 |
ttaaccctgtgagcat |
23447409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 325 - 364
Target Start/End: Complemental strand, 23447287 - 23447248
Alignment:
| Q |
325 |
ttcatctttcagactagtcatctcaaccatattcttctca |
364 |
Q |
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| T |
23447287 |
ttcatctttcagactagtcatctcaaccatattcttctca |
23447248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 100 - 195
Target Start/End: Original strand, 23432631 - 23432726
Alignment:
| Q |
100 |
tgcaaaaaatacaacttgtttcactgccttatcatagccagctttgtactgcaactcaattccactcttcaattcttcaatttcagccttcaactt |
195 |
Q |
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| T |
23432631 |
tgcaaaatatacaacttgccttaccgccttttcatagccggctttgtactgtaatgaaattttacgcttcaattcctcaatttcagccttcaactt |
23432726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 325 - 363
Target Start/End: Original strand, 23432871 - 23432909
Alignment:
| Q |
325 |
ttcatctttcagactagtcatctcaaccatattcttctc |
363 |
Q |
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| T |
23432871 |
ttcatctttcagactagtcatctctgccatattcttctc |
23432909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 100 - 201
Target Start/End: Complemental strand, 21138772 - 21138671
Alignment:
| Q |
100 |
tgcaaaaaatacaacttgtttcactgccttatcatagccagctttgtactgcaactca-attccactcttcaattcttcaatttcagccttcaacttctc |
198 |
Q |
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|||||||||||||||||| ||||| ||||||||||| || |||||||||||| ||| | ||| | ||||| |||||||||||||||||||||||| || |
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| T |
21138772 |
tgcaaaaaatacaacttgcttcaccgccttatcataaccggctttgtactgc-actgacattttatacttcagttcttcaatttcagccttcaacttgtc |
21138674 |
T |
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| Q |
199 |
aac |
201 |
Q |
| |
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||| |
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|
| T |
21138673 |
aac |
21138671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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