View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3527_high_9 (Length: 344)
Name: NF3527_high_9
Description: NF3527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3527_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 18 - 334
Target Start/End: Original strand, 6063361 - 6063677
Alignment:
| Q |
18 |
aaagaaatgtaaccacctactttacaatttagaaagtttgcaacataagaaaaatgtatcctttacatttaccttcataatataaatgtttgttgtctgt |
117 |
Q |
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| T |
6063361 |
aaagaaatgtaaccaactactttacaatttagaaagtttgcaacataagaaaaatgtatcctttacatttaccttcataacataaatgtttgttgtctgt |
6063460 |
T |
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| Q |
118 |
tttttattagccaaagcaataatctaacttattattaaatgaatgaattgactaacactacttgaaactcacctatataactgtgagatcccgagtttaa |
217 |
Q |
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| T |
6063461 |
tttttattagccaaagcaataatctaacttattattacatgaatgaattgactaacactacttgaaactcacctatataactgtgagatcctgagtttaa |
6063560 |
T |
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| Q |
218 |
atccaataaaagtgtttaggctaataatattggtcctactagttgagctatacattttggacggtgcataaccaaatattttaacagtacaccttatatt |
317 |
Q |
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|||||||||||||||| || |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6063561 |
atccaataaaagtgttcagtctaacaatattgatcctactagttgagctatacattttggacggtgcataaccaaatattttaacagtacaccttatatt |
6063660 |
T |
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| Q |
318 |
aataaacacctattcat |
334 |
Q |
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||||||||||||||||| |
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| T |
6063661 |
aataaacacctattcat |
6063677 |
T |
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