View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3527_low_1 (Length: 458)
Name: NF3527_low_1
Description: NF3527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3527_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 131; Significance: 9e-68; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 306 - 440
Target Start/End: Complemental strand, 32718743 - 32718609
Alignment:
| Q |
306 |
gatgaaaatttatatgtcacggtctcttttgcattcaggtggaatttgaggcaaacgtttcctatcagtgcaatagttataaatggtgtatttttggcgc |
405 |
Q |
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| T |
32718743 |
gatgaaaatttatatgtcacggtctcttttgcattcaggtggaatttgaggcaaacgtttcctatcggtgcaatagttataaatggtgtatttttggcgc |
32718644 |
T |
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| Q |
406 |
acccatcttagtctacgccattgagcagcatcaag |
440 |
Q |
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| T |
32718643 |
acccatcttagtctacgccattgagcagcatcaag |
32718609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 306 - 440
Target Start/End: Complemental strand, 32715365 - 32715231
Alignment:
| Q |
306 |
gatgaaaatttatatgtcacggtctcttttgcattcaggtggaatttgaggcaaacgtttcctatcagtgcaatagttataaatggtgtatttttggcgc |
405 |
Q |
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| T |
32715365 |
gatgaaaatttaaatgtcctggtctcttttgcattctggtggaacttgaggcaaacgttttctatcagtgcaatagttgtaaattgtgtatttttgacgc |
32715266 |
T |
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| Q |
406 |
acccatcttagtctacgccattgagcagcatcaag |
440 |
Q |
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| T |
32715265 |
acccatcttagcctacgccattgagcagcatcaag |
32715231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 137 - 223
Target Start/End: Complemental strand, 32718923 - 32718837
Alignment:
| Q |
137 |
cttctcaatatacagaactcgatggaacaatagtggcaataaataatgataatgatatatgtctaatacaaggaaatattagatatg |
223 |
Q |
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| T |
32718923 |
cttctcaatatacagaactcgatggaacaatagtggcaataaataatgataatgatatatgtctaatacaaggaaatattagatatg |
32718837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 95
Target Start/End: Complemental strand, 32719052 - 32718968
Alignment:
| Q |
11 |
cacagatctacaaattcnnnnnnncaacacagacctatgcaaattacaactggtactttagcacttgccattattagcacagccg |
95 |
Q |
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| T |
32719052 |
cacagatctacaaattcaaaaaaacaacacagacctatgcaaattacaactggttctttagcacttgccattattagcacagccg |
32718968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 138 - 187
Target Start/End: Complemental strand, 32715514 - 32715465
Alignment:
| Q |
138 |
ttctcaatatacagaactcgatggaacaatagtggcaataaataatgata |
187 |
Q |
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| T |
32715514 |
ttctcaatttacagaactcgatggaacaataatggcaataaataatgata |
32715465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 392
Target Start/End: Complemental strand, 32710139 - 32710057
Alignment:
| Q |
310 |
aaaatttatatgtcacggtctcttttgcattcaggtggaatttgaggcaaacgtttcctatcagtgcaatagttataaatggt |
392 |
Q |
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| T |
32710139 |
aaaatttaaatgtcacggtctcttctacattcagggggtatctgagggaaacgtgttctatcagtacagtaattataaatggt |
32710057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 346 - 440
Target Start/End: Original strand, 10379558 - 10379652
Alignment:
| Q |
346 |
ggaatttgaggcaaacgtttcctatcagtgcaatagttataaatggtgtatttttggcgcacccatcttagtctacgccattgagcagcatcaag |
440 |
Q |
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| T |
10379558 |
ggaacttgagggtaacgtttacgatcattgcaatagttataaattgtgtatttttgacgcacccatcttagcctttgccattgagcaacatcaag |
10379652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 376 - 440
Target Start/End: Complemental strand, 10411642 - 10411578
Alignment:
| Q |
376 |
caatagttataaatggtgtatttttggcgcacccatcttagtctacgccattgagcagcatcaag |
440 |
Q |
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| T |
10411642 |
caatagttataaattgtgtatttttgacgcacccatcttagtctttgccattgagcaacatcaag |
10411578 |
T |
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