View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3527_low_11 (Length: 325)
Name: NF3527_low_11
Description: NF3527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3527_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 13 - 313
Target Start/End: Complemental strand, 11327364 - 11327064
Alignment:
| Q |
13 |
cagaagcagtgaagagcattctcataattttactctcattcttgctttaattcgttacaaaatttatgtatgctatggttattgattttgagttgtagca |
112 |
Q |
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| T |
11327364 |
cagaagcagtgaagagcattctcataattttactctcattcttgctttaattcgttacaaaatttatgtatgctatggttattgattttgagttgtagca |
11327265 |
T |
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| Q |
113 |
tcagtgttaattttcattttaacattgatttttgttatattttgaagatattccatggccaagaatttactcatcaagtaaagttgaattcaacggctaa |
212 |
Q |
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| T |
11327264 |
tcagtgttaattttcattttaacattgatttttgttatattttgaagatattccatggccaagaatttactcatcaagtaaagttgaattcaacggctaa |
11327165 |
T |
|
| Q |
213 |
atttactgcaaatccattttcatatgatgcaattttttctgattttgagattgttaagatgcgttgttattttggtcttcatgtgtaattttattcttga |
312 |
Q |
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| T |
11327164 |
atttactgcaaatccattttcatatgatgcaattttttctgattttgagattgttaagatgcgttgttattttggtcttcatgtgtaattttattcttga |
11327065 |
T |
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| Q |
313 |
t |
313 |
Q |
| |
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| |
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| T |
11327064 |
t |
11327064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 13 - 313
Target Start/End: Complemental strand, 11485385 - 11485085
Alignment:
| Q |
13 |
cagaagcagtgaagagcattctcataattttactctcattcttgctttaattcgttacaaaatttatgtatgctatggttattgattttgagttgtagca |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11485385 |
cagaagcagtgaagagcattctcataattttactctcattcttgctttaattcgttacaaaatttatgtatgctatggttattgattttgagttgtagca |
11485286 |
T |
|
| Q |
113 |
tcagtgttaattttcattttaacattgatttttgttatattttgaagatattccatggccaagaatttactcatcaagtaaagttgaattcaacggctaa |
212 |
Q |
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| T |
11485285 |
tcagtgttaattttcattttaacattgatttttgttatattttgaagatattccatggccaagaatttactcatcaagtaaagttgaattcaacggctaa |
11485186 |
T |
|
| Q |
213 |
atttactgcaaatccattttcatatgatgcaattttttctgattttgagattgttaagatgcgttgttattttggtcttcatgtgtaattttattcttga |
312 |
Q |
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| T |
11485185 |
atttactgcaaatccattttcatatgatgcaattttttctgattttgagattgttaagatgcgttgttattttggtcttcatgtgtaattttattcttga |
11485086 |
T |
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| Q |
313 |
t |
313 |
Q |
| |
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| |
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| T |
11485085 |
t |
11485085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 230 - 291
Target Start/End: Complemental strand, 27136794 - 27136730
Alignment:
| Q |
230 |
tttcatatgatgcaattttttctgattttg---agattgttaagatgcgttgttattttggtctt |
291 |
Q |
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||||||||||||||||||||||| || ||| | ||||||||||||| || ||||||||||||| |
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| T |
27136794 |
tttcatatgatgcaattttttcttatgttgcacatattgttaagatgctttattattttggtctt |
27136730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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