View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3527_low_13 (Length: 319)
Name: NF3527_low_13
Description: NF3527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3527_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 9 - 285
Target Start/End: Original strand, 12692673 - 12692949
Alignment:
| Q |
9 |
gagaagaagaggaggacgatgaagacgaagatgatgaattggtgctttttgactgacgagaagaaggagcagacgatggagatgagttagatgatgaatg |
108 |
Q |
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| T |
12692673 |
gagaagaagaggaggacgatgaagacgaagatgatgaattggtgctttttgactgacgagaagaaggagcagacgatggagatgagttagatgatgaatg |
12692772 |
T |
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| Q |
109 |
gttctgacgccgtggaggggtccaaccaaattgaagcccttcctcgccatattcgtcatagatcctacgcttctcgggatctattaaaacttcataagca |
208 |
Q |
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| T |
12692773 |
gttctgacgccgtggaggggtccaaccaaattgaagcccttcctcgccatattcgtcatagatcctacgcttctcgggatctattaaaacttcataagca |
12692872 |
T |
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| Q |
209 |
ttgtaaccaaacttgaattttctttcggcttcttcttcatttccacggtttctatccgggtgataagcaaaagcaaa |
285 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
12692873 |
ttgtaaccaaacttgaattttctttcggcttcttcttcatttccacggtttctatctgggtgataagcaaaagcaaa |
12692949 |
T |
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