View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3527_low_16 (Length: 256)
Name: NF3527_low_16
Description: NF3527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3527_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 8 - 240
Target Start/End: Complemental strand, 42741233 - 42741002
Alignment:
| Q |
8 |
cgaagaatatatgaatccttttgtggccatcggttgttacttttgaaagactcaaatcaaatcaaatcaaatcaatgtcaacaagaatgaagatgatgat |
107 |
Q |
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| T |
42741233 |
cgaagaatatatgaatccttttgtggccatcggttgttacttttgaaagactcaa-tcaaatcaaatcaaatcaatgtaaacaagaatgaagatgatgat |
42741135 |
T |
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| Q |
108 |
tcctgggcaagttttactgtaggaaataaatctgtactgctttcccactaaccaaatccaactaggtatgtctaaaaggacagcgttgtcacgtctaaag |
207 |
Q |
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| T |
42741134 |
tcctgggcaagttttactgtaggaaataaatctgtactgctttcccactagccaaatccaactaggaatgtctaaaaggacagcgttgtcacgtctaaag |
42741035 |
T |
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| Q |
208 |
tagaactcaaactgtatactagagttttggccc |
240 |
Q |
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| T |
42741034 |
tagaactcaaactgtatactagagttttggccc |
42741002 |
T |
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