View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3527_low_25 (Length: 234)
Name: NF3527_low_25
Description: NF3527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3527_low_25 |
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| [»] chr4 (4 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 13 - 234
Target Start/End: Original strand, 2018979 - 2019201
Alignment:
| Q |
13 |
aataattgcttttcttctgtagaatggacacgttaagaagacatattcctgtttctggttccgagggattacttgaacttctggagatatctcaacggtt |
112 |
Q |
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| T |
2018979 |
aataattgcttttcttctgtagaatggacacgttaagaagacatattcctgtttctggttccgagggattacttgaacttctggagatatctcaacggtt |
2019078 |
T |
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| Q |
113 |
tgaagataagatttatacttccgcgacaagccaggtacattcattaccagtattgtgcagcctccactcttattcatggttacgcatgctactatgttg- |
211 |
Q |
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| T |
2019079 |
tgaagataagatttatacttccgcgacaagccaggtacattcattaccagtattgtgcagcctccactcttattcatggttacgcatgctactatgttgt |
2019178 |
T |
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| Q |
212 |
atttcagtatagaaatatagcct |
234 |
Q |
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||| ||||||||||||||||||| |
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| T |
2019179 |
attgcagtatagaaatatagcct |
2019201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 13 - 192
Target Start/End: Original strand, 2035799 - 2035978
Alignment:
| Q |
13 |
aataattgcttttcttctgtagaatggacacgttaagaagacatattcctgtttctggttccgagggattacttgaacttctggagatatctcaacggtt |
112 |
Q |
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|||||||||||||| | |||||||||||||| ||||||| |||| |||| ||||||||||| |||||||| |||||||||| | |||| ||||| |||| |
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| T |
2035799 |
aataattgcttttcctttgtagaatggacacattaagaaaacatcttcccgtttctggttctgagggattgcttgaacttcggaagattgctcaaaggtt |
2035898 |
T |
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| Q |
113 |
tgaagataagatttatacttccgcgacaagccaggtacattcattaccagtattgtgcagcctccactcttattcatggt |
192 |
Q |
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| T |
2035899 |
tgaagataagatttatactgctgcgacaagccaggtacattcattacgagtattgtgcagtctccactttcattcatggt |
2035978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 15 - 194
Target Start/End: Original strand, 1990051 - 1990230
Alignment:
| Q |
15 |
taattgcttttcttctgtagaatggacacgttaagaagacatattcctgtttctggttccgagggattacttgaacttctggagatatctcaacggtttg |
114 |
Q |
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|||||||||||| | |||||||||||||||||||||| | || |||| |||||||||| ||||||||||||||||||| | || | ||||| |||||| |
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| T |
1990051 |
taattgcttttcctttgtagaatggacacgttaagaaaatatcatcctatttctggttctgagggattacttgaacttcggaagcttgctcaaaggtttg |
1990150 |
T |
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| Q |
115 |
aagataagatttatacttccgcgacaagccaggtacattcattaccagtattgtgcagcctccactcttattcatggtta |
194 |
Q |
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| T |
1990151 |
aagataagatctatactgatgcggcaagccaggtacattcattacgagtattgtgcagtctccactttcattcatggtta |
1990230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 13 - 180
Target Start/End: Original strand, 2021611 - 2021778
Alignment:
| Q |
13 |
aataattgcttttcttctgtagaatggacacgttaagaagacatattcctgtttctggttccgagggattacttgaacttctggagatatctcaacggtt |
112 |
Q |
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|||||||| |||| |||||||||||||||||||||||| || | ||||||||||| ||| ||||||||| ||||||||| | |||| ||||| |||| |
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| T |
2021611 |
aataattgatttttctctgtagaatggacacgttaagaaaacgtcttcctgtttctagttatgagggattaattgaacttcagaagattgctcaaaggtt |
2021710 |
T |
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| Q |
113 |
tgaagataagatttatacttccgcgacaagccaggtacattcattaccagtattgtgcagcctccact |
180 |
Q |
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| T |
2021711 |
tgaagataagatttacacttctgcgacaagcaaggtacattcattacgagtattgtgctgcctccact |
2021778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 149
Target Start/End: Original strand, 40911156 - 40911269
Alignment:
| Q |
36 |
atggacacgttaagaagacatattcctgtttctggttccgagggattacttgaacttctggagatatctcaacggtttgaagataagatttatacttccg |
135 |
Q |
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|||||||| |||| ||| ||| |||||||||||||| || ||||| | |||||||| | |||| | ||| |||||||||||||||||||||| | | |
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| T |
40911156 |
atggacacattaaaaaggcatcttcctgtttctggtcaagaaggattgcatgaacttcggaagattgcccaaaagtttgaagataagatttatactgctg |
40911255 |
T |
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| Q |
136 |
cgacaagccaggta |
149 |
Q |
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| T |
40911256 |
caacaagccaggta |
40911269 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 149
Target Start/End: Complemental strand, 44968831 - 44968718
Alignment:
| Q |
36 |
atggacacgttaagaagacatattcctgtttctggttccgagggattacttgaacttctggagatatctcaacggtttgaagataagatttatacttccg |
135 |
Q |
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| T |
44968831 |
atggacacattaaaaaggcatcttcctgtttctggtcaagaaggattgcatgaacttcggaagattgcccaaaggtttgaagagaagatttatactgctg |
44968732 |
T |
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| Q |
136 |
cgacaagccaggta |
149 |
Q |
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| T |
44968731 |
caacaagccaggta |
44968718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 36 - 149
Target Start/End: Complemental strand, 44983146 - 44983033
Alignment:
| Q |
36 |
atggacacgttaagaagacatattcctgtttctggttccgagggattacttgaacttctggagatatctcaacggtttgaagataagatttatacttccg |
135 |
Q |
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|||||||| |||| ||| ||| |||||||||||||| || ||||| | ||||||| | |||| | ||| |||||||||| |||||||||||| | | |
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| T |
44983146 |
atggacacattaaaaaggcatcttcctgtttctggtcaagaaggattgcatgaactttggaagattgcccaaaggtttgaagagaagatttatactgctg |
44983047 |
T |
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| Q |
136 |
cgacaagccaggta |
149 |
Q |
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| T |
44983046 |
caacaagccaggta |
44983033 |
T |
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