View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3527_low_26 (Length: 218)

Name: NF3527_low_26
Description: NF3527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3527_low_26
NF3527_low_26
[»] chr8 (7 HSPs)
chr8 (7-218)||(6807482-6807690)
chr8 (14-217)||(6835425-6835625)
chr8 (13-207)||(6632266-6632457)
chr8 (142-218)||(6633599-6633675)
chr8 (18-148)||(6840761-6840888)
chr8 (13-147)||(6621221-6621354)
chr8 (23-141)||(6595419-6595534)
[»] scaffold0514 (1 HSPs)
scaffold0514 (23-147)||(870-991)
[»] scaffold0470 (1 HSPs)
scaffold0470 (38-147)||(10666-10772)


Alignment Details
Target: chr8 (Bit Score: 134; Significance: 6e-70; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 134; E-Value: 6e-70
Query Start/End: Original strand, 7 - 218
Target Start/End: Original strand, 6807482 - 6807690
Alignment:
Q  7 aaaactttatgacaattcttttatatttcagggttgttttgaacgacaaacaatgaacaatcaagtggataatcatggtcgttcaacagaaaccccaact 106  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||     
T  6807482 aaaaatttatgacaattcttttatatttcagggttgttttgaacgacaaacaatgaacaatcaagtggataatcatggtggttcaacagaaaccctaac- 6807580  T
Q  107 aataataaggaaccgaagaaaggttggagaaaggttttagaactagcagtgaattggctgtcatacaaaaacaagcatgaatggttggaacagatgagag 206  Q
       |||||| |||   ||||||||||||||| ||||||  || ||||||||  |||| ||||||||||||||||| ||||||||||||||||||||||||    
T  6807581 --caataagaaacaagagaaaggttggagaagggttttcaaattagcagtgcgttggttgtcatacaaaaacaaggatgaatggttggaacagatgagag 6807678  T
Q  207 gaaatatgagtg 218  Q
    ||||||||||||    
T  6807679 gaaatatgagtg 6807690  T

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Target: chr8; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 14 - 217
Target Start/End: Original strand, 6835425 - 6835625
Alignment:
Q  14 tatgacaattcttttatatttcagggttgttttgaacgacaaacaatgaacaatcaagtggataatcatggtcgttcaacagaaaccccaactaataata 113  Q
    |||||||||  ||||||||||||   |||||||||| || | ||||| |||||||||||||||||| |||||||||||||| |||||||| | | | |      
T  6835425 tatgacaatcattttatatttcatttttgttttgaaggaaagacaataaacaatcaagtggataatgatggtcgttcaacaaaaaccccatcgagtga-- 6835522  T
Q  114 aggaaccgaagaaaggttggagaaaggttttagaactagcagtgaattggctgtcatacaaaaacaagcatgaatggttggaacagatgagaggaaatat 213  Q
     |||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| ||| ||||||||| || ||||| || |||||    
T  6835523 -ggaaccaaagaaaggttggagaaaggttttagaactagcagtgaattggttgtcataccaaaacaagaatgcatggttggatcaaatgagggggaatat 6835621  T
Q  214 gagt 217  Q
    ||||    
T  6835622 gagt 6835625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 13 - 207
Target Start/End: Original strand, 6632266 - 6632457
Alignment:
Q  13 ttatgacaattcttttatatttcagggttgttttgaacgacaaacaatgaacaatcaagtggataatcatggtcgttcaacagaaaccccaactaataat 112  Q
    ||||||||||||||  |||||||| | |||||||||| | || |||||||||||||||||||||||||||||| ||||||||||||||| |||    |||    
T  6632266 ttatgacaattcttacatatttcatgattgttttgaatggcagacaatgaacaatcaagtggataatcatggtggttcaacagaaaccctaac---caat 6632362  T
Q  113 aaggaaccgaagaaaggttggagaaaggttttagaactagcagtgaattggctgtcatacaaaaacaagcatgaatggttggaacagatgagagg 207  Q
    ||| |||   ||||||||||||||| ||||||  || ||||||||  |||| ||||||||||||||||| |||| ||||||||| ||||||||||    
T  6632363 aagaaacaagagaaaggttggagaagggttttcaaattagcagtgcgttggttgtcatacaaaaacaagaatgactggttggaaaagatgagagg 6632457  T

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Target: chr8; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 142 - 218
Target Start/End: Original strand, 6633599 - 6633675
Alignment:
Q  142 tttagaactagcagtgaattggctgtcatacaaaaacaagcatgaatggttggaacagatgagaggaaatatgagtg 218  Q
    ||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  6633599 tttagaactagcattgaattggttgtcatacaaaaacaaggatgaatggttggaacagatgagaggaaatatgagtg 6633675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 18 - 148
Target Start/End: Original strand, 6840761 - 6840888
Alignment:
Q  18 acaattcttttatatttcagggttgttttgaacgacaaacaatgaacaatcaagtggataatcatggtcgttcaacagaaaccccaactaataataagga 117  Q
    |||||||||| |||||||| |||||||||||| || | |||||||||| | ||||||| ||||||||| ||||||| |||||||||||   || |  |||    
T  6840761 acaattctttcatatttcatggttgttttgaaagagagacaatgaacactgaagtggaaaatcatggtggttcaaccgaaaccccaac---tattgggga 6840857  T
Q  118 accgaagaaaggttggagaaaggttttagaa 148  Q
    ||| |||||||||||||||||||| ||||||    
T  6840858 accaaagaaaggttggagaaaggtattagaa 6840888  T

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Target: chr8; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 13 - 147
Target Start/End: Original strand, 6621221 - 6621354
Alignment:
Q  13 ttatgacaat--tcttttatatttcagggttgttttgaacgacaaacaatgaacaatcaagtggataatcatggtcgttcaacagaaaccccaactaata 110  Q
    ||||||||||  ||||| |||||| | |||||||||||| || |||||||||||||| ||||||| ||||||||  |||||||||||||| | |||   |    
T  6621221 ttatgacaatgatctttaatattttatggttgttttgaaggagaaacaatgaacaatgaagtggaaaatcatggaggttcaacagaaaccgc-act--ga 6621317  T
Q  111 ataaggaaccgaagaaaggttggagaaaggttttaga 147  Q
    |||||||| | |||||||| ||||||||||| |||||    
T  6621318 ataaggaatcaaagaaaggatggagaaaggtattaga 6621354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 141
Target Start/End: Original strand, 6595419 - 6595534
Alignment:
Q  23 tcttttatatttcagggttgttttgaacgacaaacaatgaacaatcaagtggataatcatggtcgttcaacagaaaccccaactaataataaggaaccga 122  Q
    ||||| |||||||| |||||||||||| || |||| ||||||||| ||||||  ||| ||||  |||||||||||||| || |    ||||||||| | |    
T  6595419 tctttaatatttcatggttgttttgaaggagaaacgatgaacaatgaagtggcaaattatggaggttcaacagaaaccgcacc---gaataaggaatcaa 6595515  T
Q  123 agaaaggttggagaaaggt 141  Q
    ||||||| |||||||||||    
T  6595516 agaaaggatggagaaaggt 6595534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0514 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 147
Target Start/End: Complemental strand, 991 - 870
Alignment:
Q  23 tcttttatatttcagggttgttttgaacgacaaacaatgaacaatcaagtggataatcatggtcgttcaacagaaaccccaactaataataaggaaccga 122  Q
    ||||| |||||| | |||||||||||| || |||||||||||||| ||||||| ||||||||  |||||||||||||| || |    ||||||||| | |    
T  991 tctttaatattttatggttgttttgaaggagaaacaatgaacaatgaagtggaaaatcatggaggttcaacagaaaccgcacc---gaataaggaatcaa 895  T
Q  123 agaaaggttggagaaaggttttaga 147  Q
    ||||||| |||||||| || |||||    
T  894 agaaaggatggagaaatgtattaga 870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0470 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0470
Description:

Target: scaffold0470; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 38 - 147
Target Start/End: Original strand, 10666 - 10772
Alignment:
Q  38 ggttgttttgaacgacaaacaatgaacaatcaagtggataatcatggtcgttcaacagaaaccccaactaataataaggaaccgaagaaaggttggagaa 137  Q
    |||||||||||| || |||||||||||||| ||||||| ||||||||  |||||||||||||| | |||   ||||||||| | |||||||| |||||||    
T  10666 ggttgttttgaaggagaaacaatgaacaatgaagtggaaaatcatggaggttcaacagaaaccgc-act--gaataaggaatcaaagaaaggatggagaa 10762  T
Q  138 aggttttaga 147  Q
    |||| |||||    
T  10763 aggtattaga 10772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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