View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3527_low_3 (Length: 439)
Name: NF3527_low_3
Description: NF3527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3527_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 416; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Original strand, 47729440 - 47729875
Alignment:
| Q |
1 |
atcaaagtcgcgaatgcaacagtgccatttttaaagactaaaacattgaaattttaattcagaagaatttctcaaacttaactgatgaaaagcatatgga |
100 |
Q |
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| T |
47729440 |
atcaaagtcgcgaatgcaacagtgccatttttaaagactaaaacattgaaattttaattcagaagaatttctcaaacttaactgatgaaaagcatatgga |
47729539 |
T |
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| Q |
101 |
tttctgtaaatggaccctcttgggacaaaaacatcacgcctccttgaagtactgtaattccttgaaagaattgcttctcgaattgaggctcgagcttcgg |
200 |
Q |
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| T |
47729540 |
tttctgtaaatggaccctcttgggacaaaaacatcacgcctccttgaagtactgtaattccttgaaagaattgcttctcgaattgaggctcgagcttcgg |
47729639 |
T |
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| Q |
201 |
acaaacttccttcaactctatccaagctactcataattttctacatgcaaacaaagatgatgaaatagaaactttggtttgagaagacagatagataata |
300 |
Q |
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| T |
47729640 |
acaaacttccttcaactctatccaagctactcataattttctgcatgcaaacaaagatgatgaaatagaaactttggtttgagaaaacagatagataata |
47729739 |
T |
|
| Q |
301 |
caaaactttgtgctgaaacttttttgttgatcattaataccttaatgctattgttttctttatggtcaaagcttctatatgcagagttataagtcagaaa |
400 |
Q |
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| T |
47729740 |
caaaactttgagctgaaacttttttgttgatcattaataccttaatgctactgttttctttatggtcaaagcttctatatgcagagttataagtcagaaa |
47729839 |
T |
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| Q |
401 |
ctgatgaggtttaattacttgtgttgcattactcat |
436 |
Q |
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| T |
47729840 |
ctgatgaggtttaattacttgtgttgcattattcat |
47729875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 74 - 130
Target Start/End: Original strand, 47726704 - 47726760
Alignment:
| Q |
74 |
aaacttaactgatgaaaagcatatggatttctgtaaatggaccctcttgggacaaaa |
130 |
Q |
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| T |
47726704 |
aaacttaactggtgaaaagcatgtggattcaagtaaatggacccttttggaacaaaa |
47726760 |
T |
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