View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3527_low_6 (Length: 381)
Name: NF3527_low_6
Description: NF3527
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3527_low_6 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 14 - 381
Target Start/End: Original strand, 25048851 - 25049218
Alignment:
| Q |
14 |
agaccttgcatatattttttgggtggtatccgggttccttatcaactgagttaagctcatgggaacgaatgacaattgtgattgaacatgataaaagtag |
113 |
Q |
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| T |
25048851 |
agaccttgcatatattttttgggtggtatccgggatccttatcaactgagttaagctcatgggaacgaatgacaattgtgattgaacatgataaaagtag |
25048950 |
T |
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| Q |
114 |
tttccagaatttaggattaacccaatatttggattaaacatgataaaacgacacaattttaatgaatgaaaccctatacatcaattcttctgacatcatg |
213 |
Q |
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| T |
25048951 |
tttccagaatttaggattaacccaatatttggattaaacatgataaaacaacacaattttaatgaatgaaaccctatacatcaattcttctgacatcatg |
25049050 |
T |
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| Q |
214 |
cgaataaaagaaaaatgtcatattttagggtgttcatgtcattcaagcaaacaatagccataaactctctaactttatcccattataaaatacnnnnnnn |
313 |
Q |
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| T |
25049051 |
cgaataaaagaaaaatgtcatatttttgggtgttcatgccattcaagcaaacaatagccataaactctctaactttatcccattataaaatacaaaaaaa |
25049150 |
T |
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| Q |
314 |
tgacaaaaatgtaaattgaatacatttctgattgagataacaaaacagaggaaaaggtgaatgaagtt |
381 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25049151 |
tgacaaaaatgtaaattgaatacatttctgattgagataacaaaacagaggaaaaggtgaatgaagtt |
25049218 |
T |
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