View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3528_high_2 (Length: 442)
Name: NF3528_high_2
Description: NF3528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3528_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 138; Significance: 6e-72; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 98 - 266
Target Start/End: Complemental strand, 1126421 - 1126242
Alignment:
| Q |
98 |
tacaatttgaaagataaaatgaaaaagaagggtatagtcgtcatttggttctcttaaaagctagaaaccctagttagtgagcagtatacaccatat---- |
193 |
Q |
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| T |
1126421 |
tacaatttcaaagataaaatgaaaaagaagggtatagtcgtcatttggttctcttaaaagctagaaaccctagttagtgagcagtatacaccatatcccg |
1126322 |
T |
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| Q |
194 |
-------ccgtctccattcgcgccgttctctttcgtttctgtcagaaagaacaaccaattcattccaaatggtaaaacca |
266 |
Q |
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| T |
1126321 |
agtgttaccgtctccattcgcgccgttctctttcgtttctgtcagaaagaacaaccaattcattccaaatggtaaaacca |
1126242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 31 - 100
Target Start/End: Complemental strand, 1126611 - 1126542
Alignment:
| Q |
31 |
gataaaaatgctcaacataattcaaaatcataatttttgtttgttcctttcacaaatttaaggagaatac |
100 |
Q |
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| T |
1126611 |
gataaaaatgctcaacataattcaaaatcataatttttgtttgttcctttcacaaatttaaggagaatac |
1126542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 326 - 405
Target Start/End: Complemental strand, 1126181 - 1126097
Alignment:
| Q |
326 |
gtagtaatagctagattacttttatttctattcaatttaatct-----aatttatgtaattgcgtcattttttagggtttcaaac |
405 |
Q |
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| T |
1126181 |
gtagtaatagctagattacttttatttctattcaatttaatctaatccaatttatgtaattgcatcattttttagggtttcaaac |
1126097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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