View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3528_high_4 (Length: 249)
Name: NF3528_high_4
Description: NF3528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3528_high_4 |
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| [»] scaffold0011 (1 HSPs) |
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Alignment Details
Target: scaffold0011 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 240454 - 240235
Alignment:
| Q |
1 |
atacaccgcactcaatgataccacttttttaggttaatttctaaaacatctctataactaattacttggcatgttttgattagatgcaatataagcaagt |
100 |
Q |
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| T |
240454 |
atacaccgcactcaatgataccacttttttgggttaatttctaaaatatctctataactaattacttggcatgttttgattagatgcaatataagtaagt |
240355 |
T |
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| Q |
101 |
aaaaatagtcacataaaatatgccacacacatacnnnnnnncacccatatcaagtcaaatacacaagcatcctctaatatccaaggaccgtccttcttca |
200 |
Q |
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||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
240354 |
-aaaatagtcacat--aatatgccacacacatacaaaaaaacacccatatcaagtcaaatacacaagcatcctctaatatccaaggaccgtccttctcca |
240258 |
T |
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| Q |
201 |
tttgatgcaacatgattacatga |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
240257 |
tttgatgcaacatgattacatga |
240235 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 44599484 - 44599522
Alignment:
| Q |
13 |
caatgataccacttttttaggttaatttctaaaacatct |
51 |
Q |
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|||||||||||||| ||||||||||||||||||| |||| |
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| T |
44599484 |
caatgataccacttctttaggttaatttctaaaatatct |
44599522 |
T |
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