View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3528_low_1 (Length: 564)
Name: NF3528_low_1
Description: NF3528
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3528_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 508; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 19 - 546
Target Start/End: Original strand, 1959168 - 1959695
Alignment:
| Q |
19 |
tcatgtgccataaaaatggttgaacatttctgcgtttgaaatcaaactctatacctcagggttagtgagagtgatgaagaaatgtaaagaaaagaaagtg |
118 |
Q |
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| T |
1959168 |
tcatgtgccataaaaatggttgaacatttctgcgtttgaaatcaaactctatacctcagggttagtgaaagtgatgaagaaatgtaaagaaaagaaagtg |
1959267 |
T |
|
| Q |
119 |
atgttgatatccagagagagtaaacaataattaaagctagctgcgaagaaattatatgtttttacaaaggcatttcgataaaaagtgcgtacaatgggct |
218 |
Q |
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| T |
1959268 |
atgttgatatccagagagagtaaacaataattaaagctagctgcgaagaaattatatgcttttacaaaggcatttcgataaaaagtgcgtacaatgggct |
1959367 |
T |
|
| Q |
219 |
ctcaaagtgcatatagtttcttcaaagctaactttgattgacgttttctctgtctctaggtataaccatcacttcatcttctttacggttcatcatctct |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
1959368 |
ctcaaagtgcatatagtttcttcaaagctaactttgattgacgttttctctgtctctaggtataaccatcacttcatcttctttaccgttcatcatctct |
1959467 |
T |
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| Q |
319 |
attgctatccttcagattttgattttagacatagaaatggtctatcattttgactttgaaggaagaataaggcgtcctatgtaaacaagtagtcaaaact |
418 |
Q |
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| T |
1959468 |
attgctatccttcagattttgattttagacatagaaatggtctatcattttgactttgaagaaagaataaggcgtcctatgtaaacaagtagtcaaaact |
1959567 |
T |
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| Q |
419 |
atactagatcggtcgaattgggaatcggtcttacctataatcaggcaaaacatgaggttcacaaggttctcgtagtccacaagaaaataggtttgtatcc |
518 |
Q |
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| T |
1959568 |
atactagattggtcgaattgggaatcggtcttacctataatcaggcaaaacatgaggttcacaaggttctcgtagtccacaagaaaataggtttgtatcc |
1959667 |
T |
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| Q |
519 |
ctataatcttaatcactgctgtcctctt |
546 |
Q |
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| T |
1959668 |
ctataatcttaatcactgctgtcctctt |
1959695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 197 - 545
Target Start/End: Complemental strand, 2024164 - 2023820
Alignment:
| Q |
197 |
taaaaagtgcgtacaatgggctctcaaagtgcatatagtttcttcaaagctaactttgattgacgttttctctgtctctaggtataaccatcacttcatc |
296 |
Q |
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||||||||| |||||||| ||||||| || ||||||||||||||||| |||||||| ||||| |||||||| |||||||||||||||||||||||||| |
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| T |
2024164 |
taaaaagtgtttacaatggactctcaatgt--atatagtttcttcaaagttaactttggttgacattttctctatctctaggtataaccatcacttcatc |
2024067 |
T |
|
| Q |
297 |
ttctttacggttcatcatctctattgctatccttcagattttgattttagacatagaaatggtctatcattttgactttgaa-ggaagaataaggcgtcc |
395 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||| |||||| |||||||||||| |||| |
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| T |
2024066 |
ttctttacggttcatcatctctattgctatccttcagattttgattttaaacatagaaatgatctaccattttgattttgaagggaagaataaggtgtcc |
2023967 |
T |
|
| Q |
396 |
tatgtaaacaagtagtcaaaactatactagatcggtcgaattgggaatcggtcttacctataatcaggcaaaacatgaggttcacaaggttctcgtagtc |
495 |
Q |
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|||| |||||||||||||||||||||||||||| ||| | ||||||||| |||| ||||||||| || |||||| |||||||||||||| |||||| |
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| T |
2023966 |
tatgcaaacaagtagtcaaaactatactagatcagtcaagttgggaatcagtctgccctataatcggg---tacatgatgttcacaaggttcttgtagtc |
2023870 |
T |
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| Q |
496 |
cacaagaaaataggtttgtatccctataatcttaatcactgctgtcctct |
545 |
Q |
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| T |
2023869 |
ctcaagaaaataggtttgtatccctataatcttaattgttgctgtcctct |
2023820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 19 - 176
Target Start/End: Complemental strand, 2024370 - 2024213
Alignment:
| Q |
19 |
tcatgtgccataaaaatggttgaacatttctgcgtttgaaatcaaactctatacctcagggttagtgagagtgatgaagaaatgtaaagaaaagaaagtg |
118 |
Q |
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|||| |||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
2024370 |
tcatatgccctaaaaatggttgaacgtttctgcgtttgaaatcaaactctatacctcagggttagtgagagtgatgaggaaatgtaaagaaaagaaagtg |
2024271 |
T |
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| Q |
119 |
atgttgatatccagagagagtaaacaataattaaagctagctgcgaagaaattatatg |
176 |
Q |
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||| ||||||| |||||||||||||| |||| |||||||| |||||||||| |||||| |
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| T |
2024270 |
atggtgatatctagagagagtaaacactaatcaaagctagttgcgaagaaactatatg |
2024213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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