View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3529_high_11 (Length: 295)
Name: NF3529_high_11
Description: NF3529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3529_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 3 - 134
Target Start/End: Complemental strand, 32944360 - 32944230
Alignment:
| Q |
3 |
gttgtcccaactctccttcccttcacatcaaaatcaaatccaaatccagttaaaaccatgttacgaatatgttatgaacaaccatctctttnnnnnnnnt |
102 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| | |
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| T |
32944360 |
gttgtcccaactctccttcccttcacatcaaaatcaaatccaaatccagttaaaaccgtgttacgaacatgttatgaacaaccatctcttt-aattgttt |
32944262 |
T |
|
| Q |
103 |
ttaccctaattgacagatgaaaaataccaaac |
134 |
Q |
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| T |
32944261 |
tcaccctaattgacagatgaaaaataccaaac |
32944230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 3 - 134
Target Start/End: Complemental strand, 33370751 - 33370621
Alignment:
| Q |
3 |
gttgtcccaactctccttcccttcacatcaaaatcaaatccaaatccagttaaaaccatgttacgaatatgttatgaacaaccatctctttnnnnnnnnt |
102 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| | |
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| T |
33370751 |
gttgtcccaactctccttcccttcacatcaaaatcaaatccaaatccagttaaaaccgtgttacgaacatgttatgaacaaccatctcttt-aattgttt |
33370653 |
T |
|
| Q |
103 |
ttaccctaattgacagatgaaaaataccaaac |
134 |
Q |
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| |||||||||||||||||||||||||||||| |
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| T |
33370652 |
tcaccctaattgacagatgaaaaataccaaac |
33370621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 3 - 134
Target Start/End: Complemental strand, 32548547 - 32548417
Alignment:
| Q |
3 |
gttgtcccaactctccttcccttcacatcaaaatcaaatccaaatccagttaaaaccatgttacgaatatgttatgaacaaccatctctttnnnnnnnnt |
102 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| | |
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| T |
32548547 |
gttgtcccaactctccttcccttcacatcaaaatcaaatccaaatcatgttaaaaccatgttacgaacatgttatgaacaaccatctcttt-aattattt |
32548449 |
T |
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| Q |
103 |
ttaccctaattgacagatgaaaaataccaaac |
134 |
Q |
| |
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| |||||||||||||||||||||||||||||| |
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|
| T |
32548448 |
tcaccctaattgacagatgaaaaataccaaac |
32548417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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