View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3529_high_17 (Length: 240)
Name: NF3529_high_17
Description: NF3529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3529_high_17 |
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| [»] chr6 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 20 - 240
Target Start/End: Original strand, 888512 - 888733
Alignment:
| Q |
20 |
atgatagcattgtagaacctgatttttgcttaaatgacaaaaacagaatttcattaataaaataaaaagcaaatattgtcatctttattgaaatcctcaa |
119 |
Q |
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| T |
888512 |
atgatagcattgtagaacctgatttttgcttaaatgacaaaaacagaatttcattaataaaataacaagcaaatattgtcatctttattgaaatcctcaa |
888611 |
T |
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| Q |
120 |
aacataactttctgtgatttctgctaagtgcaaacacagtccataatgtgtgttattagaccataggatacaagaatttccaaacatttta-cttctcag |
218 |
Q |
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| T |
888612 |
aacataactttctgtgatttctgctaagtgcaaacacagtccataatgtgtgttattagaccataggatacaagaatttccaaacattttaccttctcag |
888711 |
T |
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| Q |
219 |
gaacctcatttcacagatttac |
240 |
Q |
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| T |
888712 |
gaacctcatttcacagatttac |
888733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 22 - 239
Target Start/End: Complemental strand, 1002864 - 1002640
Alignment:
| Q |
22 |
gatagcattgtagaacctgatttttgcttaaatgacaaaaacagaatttcattaataaaataaaaagcaaatattgtcatctttattgaaatcctcaaaa |
121 |
Q |
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| T |
1002864 |
gatagcattgtagaacctgttttttgcttaaatggcaaaaacagaatttcattaataaaatagcatgcaaatatttccat---tattgaaatcctcagaa |
1002768 |
T |
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| Q |
122 |
cataac---tttctgtgatttctgctaagtgcaaac-------acagtccataatgtgtgttattagaccataggatacaagaatttccaaacattttac |
211 |
Q |
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| T |
1002767 |
cataacaactttctgtgatttctgctaagtgcaaactgcaaacacagtccataatgtgtgttattagactataggatacaagaatttccaaacatttacc |
1002668 |
T |
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| Q |
212 |
ttctcaggaacctcatttcacagattta |
239 |
Q |
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| T |
1002667 |
ttctcaggatcctcatttcacagattta |
1002640 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 189 - 240
Target Start/End: Complemental strand, 913735 - 913683
Alignment:
| Q |
189 |
acaagaatttccaaacattttac-ttctcaggaacctcatttcacagatttac |
240 |
Q |
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| T |
913735 |
acaagaatttccaaacattttaccttctcaggaacctcatttcacagatttac |
913683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 81
Target Start/End: Complemental strand, 7553384 - 7553339
Alignment:
| Q |
36 |
acctgatttttgcttaaatgacaaaaacagaatttcattaataaaa |
81 |
Q |
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||||| |||||||||||||||||||||| ||||| ||||||||||| |
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| T |
7553384 |
acctggtttttgcttaaatgacaaaaaccgaattgcattaataaaa |
7553339 |
T |
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