View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3529_high_19 (Length: 220)
Name: NF3529_high_19
Description: NF3529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3529_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 163; Significance: 3e-87; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 163; E-Value: 3e-87
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 22406026 - 22406229
Alignment:
| Q |
1 |
gaaatgatacatactctaatctttctctaatttttcagtatttaagaatgaaccactcgttttcaatcaattcaaagaagatgtgataatgnnnnnnnat |
100 |
Q |
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| T |
22406026 |
gaaatgatacatactataatctttctctaatttttcagtatttaagaatgaaccactcgttttcaatcaatccagagaagatgtgatgatgtttttttat |
22406125 |
T |
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| Q |
101 |
tgttcattatttaactttaaaattcaccattcattatcaaattatcatcaatcaaaacatgaaacaagtagagagcaaatgagacatgaaattatttgaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
22406126 |
tgttcattatttaactttaaaattcaccattcattatcaaattatcatcaatcaaaacatgaaacaagtagagagcaaatgagacataaaattatttgaa |
22406225 |
T |
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| Q |
201 |
aaac |
204 |
Q |
| |
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|||| |
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| T |
22406226 |
aaac |
22406229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 23531333 - 23531547
Alignment:
| Q |
1 |
gaaatgatacatactctaatctttctctaatttttcagtatttaagaatgaaccactcgttttcaatcaattcaaagaagatgtgataatgnnnnnnn-- |
98 |
Q |
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|||| |||||||||||||| ||||||||||||||||||| || |||||||||||| ||||||| ||| || |||||||| ||||||| |
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| T |
23531333 |
gaaaggatacatactctaaattttctctaatttttcagtaaaaaataatgaaccactctttttcaaccaacccagagaagatgcgataatgggttgtttt |
23531432 |
T |
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| Q |
99 |
-attgttcattatttaactttaaaattcaccattcattatcaaattat--------catcaatcaaaacatgaaacaagtagagagcaaatgagacatga |
189 |
Q |
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||||||||| | |||||||||||||||||||||||||||||||||| |||||||| |||||||||| ||||||||| ||||| |||||| |
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| T |
23531433 |
tattgttcatcttctaactttaaaattcaccattcattatcaaattataaatttatcatcaatcgaaacatgaaataagtagagaataaatgggacatgg |
23531532 |
T |
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| Q |
190 |
aattatttgaaaaac |
204 |
Q |
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||||||||||||||| |
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| T |
23531533 |
aattatttgaaaaac |
23531547 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 110 - 204
Target Start/End: Complemental strand, 38206592 - 38206500
Alignment:
| Q |
110 |
tttaactttaaaattcaccattcattatcaaattatcatcaatcaaaacatgaaacaagtagagagcaaatgagacatgaaattatttgaaaaac |
204 |
Q |
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||||||||||||||||| |||||||||||||||| |||||||| |||||||||||||| || ||| ||||| |||| | ||||||||||||||| |
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| T |
38206592 |
tttaactttaaaattcatcattcattatcaaatt-tcatcaattaaaacatgaaacaaatatagaagaaatg-gacaaggaattatttgaaaaac |
38206500 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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