View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3529_high_2 (Length: 815)

Name: NF3529_high_2
Description: NF3529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3529_high_2
NF3529_high_2
[»] chr6 (16 HSPs)
chr6 (1-467)||(21158220-21158683)
chr6 (157-256)||(21175402-21175501)
chr6 (538-667)||(21285619-21285749)
chr6 (136-230)||(21173467-21173561)
chr6 (521-606)||(21259050-21259135)
chr6 (523-608)||(21158814-21158900)
chr6 (520-606)||(21111853-21111939)
chr6 (524-592)||(21248861-21248929)
chr6 (667-711)||(21285935-21285979)
chr6 (629-667)||(21158925-21158963)
chr6 (433-482)||(21184469-21184518)
chr6 (152-213)||(21270337-21270398)
chr6 (420-479)||(21258977-21259036)
chr6 (403-466)||(33707730-33707788)
chr6 (87-132)||(21146420-21146465)
chr6 (173-230)||(21349911-21349968)
[»] scaffold0060 (1 HSPs)
scaffold0060 (1-101)||(17576-17676)
[»] scaffold0016 (8 HSPs)
scaffold0016 (24-115)||(63108-63198)
scaffold0016 (136-229)||(38863-38955)
scaffold0016 (372-467)||(63414-63504)
scaffold0016 (221-276)||(40082-40137)
scaffold0016 (152-213)||(70363-70424)
scaffold0016 (529-608)||(63213-63292)
scaffold0016 (667-709)||(31458-31500)
scaffold0016 (136-182)||(62964-63010)
[»] chr5 (4 HSPs)
chr5 (152-262)||(21635279-21635392)
chr5 (152-262)||(21643526-21643639)
chr5 (372-417)||(21635187-21635232)
chr5 (372-417)||(21643434-21643479)
[»] scaffold0272 (1 HSPs)
scaffold0272 (221-276)||(19600-19655)
[»] chr1 (1 HSPs)
chr1 (62-115)||(7990073-7990126)
[»] scaffold0719 (3 HSPs)
scaffold0719 (224-276)||(5530-5582)
scaffold0719 (152-213)||(4858-4919)
scaffold0719 (152-213)||(7083-7144)
[»] chr8 (2 HSPs)
chr8 (667-711)||(4061051-4061095)
chr8 (146-230)||(24944205-24944289)


Alignment Details
Target: chr6 (Bit Score: 358; Significance: 0; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 1 - 467
Target Start/End: Original strand, 21158220 - 21158683
Alignment:
Q  1 ttatgtcgcattgcatccacaagttaaagggttgagtgattgatatattgtagaaaatttgatatcatgactcctaagttgtatgaactaatatctatct 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21158220 ttatgtcgcattgcatccacaagttaaagggttgagtgaatgatatattgtagaaaatttgatatcatgactcctaagttgtatgaactaatatctatct 21158319  T
Q  101 actgataattttagagttgattagtgcgataacttagtttagctgttgtattgcacgtttaaggaactaagtttactttcacattgaatgcaacatacta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  21158320 actgataattttagagttgattagtgcgataacttagtttagctgttgtattgcatgtttaaggaactaagtttactttcacattgaatgcaacatacta 21158419  T
Q  201 ccaaatataagttcaggagacatggtttaaccgttgcagtagttaaagtaagattacggagagggatcaatcgcatattaaagccgaaaattgatcattt 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  21158420 ccaaatataagttcaggagacatggtttaaccgttgcagtagttaaagtaagattacggaaagggatcaatcgcatattaaagccgaaaattgatcattt 21158519  T
Q  301 gaaactgaaattcgccattaggaacatataatctgcattt--gaaagacgaaaattgtattgaatttaggcccatatcaagttagaaagaacatttttga 398  Q
    |||||||||||| | ||||||||||| |||||||| ||||   |  | | ||  |||||||||||||  |||||||||||||||||||||||||||||||    
T  21158520 gaaactgaaatttgtcattaggaacaaataatctggattttgcagtgtctaaggttgtattgaatttgagcccatatcaagttagaaagaacatttttga 21158619  T
Q  399 agttaaaacctaatcccattgaattaaaacacttacaaatggtaaagtcaaataattgatgagtgcata 467  Q
    |||||||||||||||||||||     ||| ||||||||||||| |||||||||||  ||||||||||||    
T  21158620 agttaaaacctaatcccattg-----aaatacttacaaatggtgaagtcaaataagggatgagtgcata 21158683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 157 - 256
Target Start/End: Original strand, 21175402 - 21175501
Alignment:
Q  157 gtttaaggaactaagtttactttcacattgaatgcaacatactaccaaatataagttcaggagacatggtttaaccgttgcagtagttaaagtaagatta 256  Q
    ||||||||||||| |||||| ||||||||  ||||||||| ||||||||||||| || |||||||||||||||||| ||||||||||||||| |||||||    
T  21175402 gtttaaggaactaggtttacgttcacattttatgcaacattctaccaaatataaatttaggagacatggtttaaccattgcagtagttaaagcaagatta 21175501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 538 - 667
Target Start/End: Original strand, 21285619 - 21285749
Alignment:
Q  538 cactagtgaaaaatttatggtaggagtcttggcttcatatatgcttataagtagctagttattgactatgaaaaattta-tggtagagtgataaaagaat 636  Q
    ||||||||||||| |||||| |||| |||||||||||||||||||||||| |||||||||||| |||||||  | |  |   ||| |||| ||||||||     
T  21285619 cactagtgaaaaaattatggcaggactcttggcttcatatatgcttataactagctagttattaactatgatcactaaacaagtacagtggtaaaagaac 21285718  T
Q  637 tatggcagcaatccttgatatatgaatcatt 667  Q
    ||||||| |||||||||||||||||||||||    
T  21285719 tatggcaacaatccttgatatatgaatcatt 21285749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 136 - 230
Target Start/End: Original strand, 21173467 - 21173561
Alignment:
Q  136 agtttagctgttgtattgcacgtttaaggaactaagtttactttcacattgaatgcaacatactaccaaatataagttcaggagacatggtttaa 230  Q
    ||||| ||| |||||||||| | ||||||||||||||||||||||||||| |||| ||||| ||||||||| |||||| ||| ||||||||||||    
T  21173467 agttttgcttttgtattgcatggttaaggaactaagtttactttcacatttaatgtaacatgctaccaaatgtaagtttaggcgacatggtttaa 21173561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 521 - 606
Target Start/End: Original strand, 21259050 - 21259135
Alignment:
Q  521 tatatgcaaaacaagtgcactagtgaaaaatttatggtaggagtcttggcttcatatatgcttataagtagctagttattgactat 606  Q
    |||||||||||||||||||||| ||||| | ||||| || || |||||||||||||||||||||||| | ||||||||||||||||    
T  21259050 tatatgcaaaacaagtgcactattgaaagaattatgatatgattcttggcttcatatatgcttataactggctagttattgactat 21259135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 523 - 608
Target Start/End: Original strand, 21158814 - 21158900
Alignment:
Q  523 tatgcaaaacaagtgcactagtgaaaaatttatggtaggagtcttggcttcatatatgcttataagtagctagtt-attgactatga 608  Q
    |||||||||||||| ||| ||||||| | ||||||||||| | ||||| |||||||||||||||| ||||||||| |||||||||||    
T  21158814 tatgcaaaacaagtacacaagtgaaagaattatggtaggactattggcctcatatatgcttataactagctagttaattgactatga 21158900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 520 - 606
Target Start/End: Original strand, 21111853 - 21111939
Alignment:
Q  520 atatatgcaaaacaagtgcactagtgaaaaatttatggtaggagtcttggcttcatatatgcttataagtagctagttattgactat 606  Q
    ||||||||||  ||||| ||||| ||||| | ||||||||| | |||| |||||||||||||| |||| ||||||||||||||||||    
T  21111853 atatatgcaacccaagtacactattgaaagaattatggtagaactcttagcttcatatatgctcataactagctagttattgactat 21111939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 524 - 592
Target Start/End: Complemental strand, 21248929 - 21248861
Alignment:
Q  524 atgcaaaacaagtgcactagtgaaaaatttatggtaggagtcttggcttcatatatgcttataagtagc 592  Q
    ||||||||||||| ||||||||||| | |||| |||||| ||||||||||| | |||||||||| ||||    
T  21248929 atgcaaaacaagtacactagtgaaagaattatagtaggactcttggcttcaaaaatgcttataactagc 21248861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 667 - 711
Target Start/End: Original strand, 21285935 - 21285979
Alignment:
Q  667 tcttactccatggttgagactccttccttgtcaagataaagctgg 711  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||    
T  21285935 tcttactccatggttgaaactccttccttgtcgagataaagctgg 21285979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 629 - 667
Target Start/End: Original strand, 21158925 - 21158963
Alignment:
Q  629 aaaagaattatggcagcaatccttgatatatgaatcatt 667  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  21158925 aaaagaattatggcagcaatcattgatatatgaatcatt 21158963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 433 - 482
Target Start/End: Original strand, 21184469 - 21184518
Alignment:
Q  433 acaaatggtaaagtcaaataattgatgagtgcatacatgaatagtttctt 482  Q
    ||||||||| |||| ||||||  |||||||||||||||||||||||||||    
T  21184469 acaaatggtgaagttaaataacggatgagtgcatacatgaatagtttctt 21184518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 213
Target Start/End: Original strand, 21270337 - 21270398
Alignment:
Q  152 tgcacgtttaaggaactaagtttactttcacattgaatgcaacatactaccaaatataagtt 213  Q
    |||| ||||||||||| |||| |||||||||||| |||| ||||| ||||||||| ||||||    
T  21270337 tgcatgtttaaggaacgaagtatactttcacatttaatgaaacatgctaccaaatgtaagtt 21270398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 420 - 479
Target Start/End: Original strand, 21258977 - 21259036
Alignment:
Q  420 aattaaaacacttacaaatggtaaagtcaaataattgatgagtgcatacatgaatagttt 479  Q
    |||| |||||||||||||||||  ||||||||||  ||| ||||||||||| ||||||||    
T  21258977 aattgaaacacttacaaatggtgtagtcaaataagagataagtgcatacataaatagttt 21259036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 403 - 466
Target Start/End: Original strand, 33707730 - 33707788
Alignment:
Q  403 aaaacctaatcccattgaattaaaacacttacaaatggtaaagtcaaataattgatgagtgcat 466  Q
    |||||||||||||||||||     ||||||||||||||| |||||||||||  |||||||||||    
T  33707730 aaaacctaatcccattgaa-----acacttacaaatggtgaagtcaaataaaggatgagtgcat 33707788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 21146420 - 21146465
Alignment:
Q  87 actaatatctatctactgataattttagagttgattagtgcgataa 132  Q
    ||||||||||||||| ||||||||||| |||| |||||||| ||||    
T  21146420 actaatatctatctagtgataattttaaagttcattagtgcaataa 21146465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 230
Target Start/End: Original strand, 21349911 - 21349968
Alignment:
Q  173 ttactttcacattgaatgcaacatactaccaaatataagttcaggagacatggtttaa 230  Q
    |||||||||||||  ||||||||| ||||||||| || ||| ||| ||||||||||||    
T  21349911 ttactttcacattttatgcaacatgctaccaaatgtatgtttaggcgacatggtttaa 21349968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 69; Significance: 2e-30; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 17676 - 17576
Alignment:
Q  1 ttatgtcgcattgcatccacaagttaaagggttgagtgattgatatattgtagaaaatttgatatcatgactcctaagttgtatgaactaatatctatct 100  Q
    ||||||||||||||||||||| ||||| |||||||||||||| || |||||| |||| || |||||||||||| ||||||||||||||||||||||||||    
T  17676 ttatgtcgcattgcatccacatgttaatgggttgagtgattggtacattgtacaaaactttatatcatgactcttaagttgtatgaactaatatctatct 17577  T
Q  101 a 101  Q
    |    
T  17576 a 17576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 56; Significance: 9e-23; HSPs: 8)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 24 - 115
Target Start/End: Complemental strand, 63198 - 63108
Alignment:
Q  24 ttaaagggttgagtgattgatatattgtagaaaatttgatatcatgactcctaagttgtatgaactaatatctatctactgataattttaga 115  Q
    ||||||||||||||||||| || |||||| |||||| |||||||||||||||| ||||||||||| |||||| ||||| |||||||||||||    
T  63198 ttaaagggttgagtgattggtacattgtacaaaatt-gatatcatgactcctaggttgtatgaaccaatatccatctagtgataattttaga 63108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 136 - 229
Target Start/End: Complemental strand, 38955 - 38863
Alignment:
Q  136 agtttagctgttgtattgcacgtttaaggaactaagtttactttcacattgaatgcaacatactaccaaatataagttcaggagacatggttta 229  Q
    ||||||| |||||||||| |  ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||  ||||||||||    
T  38955 agtttagttgttgtattgtat-tttgaggaactaagtttactttcacattgagtgcaacatactaccaaatataagtttaggcaacatggttta 38863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 372 - 467
Target Start/End: Complemental strand, 63504 - 63414
Alignment:
Q  372 atatcaagttagaaagaacatttttgaagttaaaacctaatcccattgaattaaaacacttacaaatggtaaagtcaaataattgatgagtgcata 467  Q
    ||||| |||||||||||||| |||||||| ||||||||||||||||||     |||||| || ||||||| |||||||| || |||||||||||||    
T  63504 atatctagttagaaagaacagttttgaagctaaaacctaatcccattg-----aaacacatataaatggtgaagtcaaaaaagtgatgagtgcata 63414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 221 - 276
Target Start/End: Complemental strand, 40137 - 40082
Alignment:
Q  221 catggtttaaccgttgcagtagttaaagtaagattacggagagggatcaatcgcat 276  Q
    |||||||||||| || |||||||||||||||||||| || ||||||||||||||||    
T  40137 catggtttaaccattacagtagttaaagtaagattatggggagggatcaatcgcat 40082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 213
Target Start/End: Complemental strand, 70424 - 70363
Alignment:
Q  152 tgcacgtttaaggaactaagtttactttcacattgaatgcaacatactaccaaatataagtt 213  Q
    |||| |||||||||| |||||||||||||||| | |||||||||| |||||| || ||||||    
T  70424 tgcatgtttaaggaattaagtttactttcacagttaatgcaacatgctaccacatgtaagtt 70363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 529 - 608
Target Start/End: Complemental strand, 63292 - 63213
Alignment:
Q  529 aaacaagtgcactagtgaaaaatttatggtaggagtcttggcttcatatatgcttataagtagctagttattgactatga 608  Q
    |||||||| ||||||| ||| | ||||||||| | ||||||||||| | |||||||||  ||| || |||||||||||||    
T  63292 aaacaagtacactagtaaaagaattatggtagaactcttggcttcaaaaatgcttatagctaggtaattattgactatga 63213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 667 - 709
Target Start/End: Complemental strand, 31500 - 31458
Alignment:
Q  667 tcttactccatggttgagactccttccttgtcaagataaagct 709  Q
    ||||||||||||||||| |||||||||||||  ||||||||||    
T  31500 tcttactccatggttgaaactccttccttgttgagataaagct 31458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 136 - 182
Target Start/End: Complemental strand, 63010 - 62964
Alignment:
Q  136 agtttagctgttgtattgcacgtttaaggaactaagtttactttcac 182  Q
    ||||||| |||||||||||| |||| ||||||||| |||||||||||    
T  63010 agtttagttgttgtattgcatgtttgaggaactaaatttactttcac 62964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 152 - 262
Target Start/End: Complemental strand, 21635392 - 21635279
Alignment:
Q  152 tgcacgtttaaggaactaagtttactttcacattgaatgcaacatactaccaaatataagt---tcaggagacatggtttaaccgttgcagtagttaaag 248  Q
    |||| ||||||||||| |||| |||||||||||| |||| ||||| ||||||||| |||||   | || | ||||||||||  | |||||||||||||||    
T  21635392 tgcatgtttaaggaacaaagtatactttcacatttaatgaaacatgctaccaaatgtaagttaattagcaaacatggtttacgcattgcagtagttaaag 21635293  T
Q  249 taagattacggaga 262  Q
    |||||||| |||||    
T  21635292 taagattaaggaga 21635279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 152 - 262
Target Start/End: Complemental strand, 21643639 - 21643526
Alignment:
Q  152 tgcacgtttaaggaactaagtttactttcacattgaatgcaacatactaccaaatataagt---tcaggagacatggtttaaccgttgcagtagttaaag 248  Q
    |||| ||||||||||| |||| |||||||||||| |||| ||||| ||||||||| |||||   | || | ||||||||||  | |||||||||||||||    
T  21643639 tgcatgtttaaggaacaaagtatactttcacatttaatgaaacatgctaccaaatgtaagttaattagcaaacatggtttacgcattgcagtagttaaag 21643540  T
Q  249 taagattacggaga 262  Q
    |||||||| |||||    
T  21643539 taagattaaggaga 21643526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 372 - 417
Target Start/End: Complemental strand, 21635232 - 21635187
Alignment:
Q  372 atatcaagttagaaagaacatttttgaagttaaaacctaatcccat 417  Q
    |||| |||||||||| |||| |||||||| ||||||||||||||||    
T  21635232 atattaagttagaaacaacagttttgaagctaaaacctaatcccat 21635187  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 372 - 417
Target Start/End: Complemental strand, 21643479 - 21643434
Alignment:
Q  372 atatcaagttagaaagaacatttttgaagttaaaacctaatcccat 417  Q
    |||| |||||||||| |||| |||||||| ||||||||||||||||    
T  21643479 atattaagttagaaacaacagttttgaagctaaaacctaatcccat 21643434  T

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Target: scaffold0272 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 221 - 276
Target Start/End: Original strand, 19600 - 19655
Alignment:
Q  221 catggtttaaccgttgcagtagttaaagtaagattacggagagggatcaatcgcat 276  Q
    |||||||||||| || |||||||||||||||||||| || ||||||||||||||||    
T  19600 catggtttaaccattacagtagttaaagtaagattatggggagggatcaatcgcat 19655  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 62 - 115
Target Start/End: Original strand, 7990073 - 7990126
Alignment:
Q  62 atatcatgactcctaagttgtatgaactaatatctatctactgataattttaga 115  Q
    |||||||||||||| || |||||||||||||||||||||| |||||| ||||||    
T  7990073 atatcatgactcctgagctgtatgaactaatatctatctagtgataaatttaga 7990126  T

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Target: scaffold0719 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: scaffold0719
Description:

Target: scaffold0719; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 224 - 276
Target Start/End: Original strand, 5530 - 5582
Alignment:
Q  224 ggtttaaccgttgcagtagttaaagtaagattacggagagggatcaatcgcat 276  Q
    ||||||||| || |||||||||||||||||||| || ||||||||||||||||    
T  5530 ggtttaaccattacagtagttaaagtaagattatggggagggatcaatcgcat 5582  T

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Target: scaffold0719; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 213
Target Start/End: Original strand, 4858 - 4919
Alignment:
Q  152 tgcacgtttaaggaactaagtttactttcacattgaatgcaacatactaccaaatataagtt 213  Q
    |||| |||||||||| |||||||||||||||||| ||| |||||  |||| |||| ||||||    
T  4858 tgcatgtttaaggaattaagtttactttcacatttaatacaacacgctacgaaatgtaagtt 4919  T

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Target: scaffold0719; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 213
Target Start/End: Original strand, 7083 - 7144
Alignment:
Q  152 tgcacgtttaaggaactaagtttactttcacattgaatgcaacatactaccaaatataagtt 213  Q
    |||| |||||||||| ||||||||||| |||||| ||| |||||  ||||||||| ||||||    
T  7083 tgcatgtttaaggaattaagtttacttccacatttaatacaacaccctaccaaatgtaagtt 7144  T

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Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 667 - 711
Target Start/End: Complemental strand, 4061095 - 4061051
Alignment:
Q  667 tcttactccatggttgagactccttccttgtcaagataaagctgg 711  Q
    ||||||||||||||||| |||||||||||||| ||||||||||||    
T  4061095 tcttactccatggttgaaactccttccttgtcgagataaagctgg 4061051  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 230
Target Start/End: Original strand, 24944205 - 24944289
Alignment:
Q  146 ttgtattgcacgtttaaggaactaagtttactttcacattgaatgcaacatactaccaaatataagttcaggagacatggtttaa 230  Q
    |||||||||| | ||||| ||||||||||||||||||||| |||| ||||| ||| ||||| |||||| ||| | |||| |||||    
T  24944205 ttgtattgcatggttaagaaactaagtttactttcacatttaatgtaacatgctatcaaatgtaagtttaggcggcatgatttaa 24944289  T

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