View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3529_high_3 (Length: 632)
Name: NF3529_high_3
Description: NF3529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3529_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 215 - 621
Target Start/End: Complemental strand, 43669928 - 43669522
Alignment:
| Q |
215 |
atcatcataaatttaaaatttatgtttgtctggtatgataaagaatgagaatcaatgttttctttctctttcacagatggaaccatgccaaaagtagagt |
314 |
Q |
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| T |
43669928 |
atcatcataaatttaaaatttatgtttgtctggtatgataaagaatgagaatcaatgttttctttctctttcacagatggaaccatgccaaaagtagagt |
43669829 |
T |
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| Q |
315 |
ggatgtctacgcctttatgagtgggaaaaccattagctcttgagagcatccattatgtctcccccacaaaaatatgatagtactgaatcatcatgcaatg |
414 |
Q |
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| T |
43669828 |
ggatgtctacgcctttatgagtgggaaaaccattagctcttgagagcatccattatgtctcccccacaaaaatatgatagtactaaatcatcatgcaatg |
43669729 |
T |
|
| Q |
415 |
cttaaccataaatatgcaatcattataatgtgnnnnnnnnnnnnngcaagacaacttgggatctgaatgaattggatgcaaaacatggtcggtacattta |
514 |
Q |
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| T |
43669728 |
cttaaccataaatatgcaatcattataatgtgttttttcatttttgcaagacaacttgggatctgaatgaattggatgcaaaacatggtcggtacattta |
43669629 |
T |
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| Q |
515 |
agggtatccgattaagatcaatccatttaaatttcttaatggaacagtcacgtatacatcaatgagtaaaccaccaatttgaaccaagtctttgtaagcc |
614 |
Q |
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| T |
43669628 |
agggtatccgattaagatcaatccatttaaatttcttaatggaacagtcacatatacatcaatgagtaaaccaccaatttgaaccaagtctttgtaagcc |
43669529 |
T |
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| Q |
615 |
actttca |
621 |
Q |
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| T |
43669528 |
actttca |
43669522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 18 - 180
Target Start/End: Complemental strand, 43670125 - 43669963
Alignment:
| Q |
18 |
tgagtcgccagaacaatccaagatatcatcaactcatgtcactactcacatgaaaatcttgttgcttatcaatcgcaaatcttttaaagatactaagaat |
117 |
Q |
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| T |
43670125 |
tgagtcgccagaacaatccaagatatcatcaactcatgtcactactcacatgaaaatcttgttgcttatcaatcgcaaatcttttaaagatactaagaat |
43670026 |
T |
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| Q |
118 |
aacccacaacttttgtgttgtggctataaatcaacnnnnnnnggtaaccgacgtgaaaactta |
180 |
Q |
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| T |
43670025 |
aacccacaacttttgtgttgtggctataaatcaacaaaaaaaggtaaccgacgtgaaaactta |
43669963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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