View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3529_high_4 (Length: 427)
Name: NF3529_high_4
Description: NF3529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3529_high_4 |
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| [»] scaffold0166 (4 HSPs) |
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Alignment Details
Target: scaffold0166 (Bit Score: 306; Significance: 1e-172; HSPs: 4)
Name: scaffold0166
Description:
Target: scaffold0166; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 19 - 356
Target Start/End: Complemental strand, 20550 - 20214
Alignment:
| Q |
19 |
aaccagtgtattgtctgaagctacctgtgttttcattatctccctagaattgttgaagttgtcttatgccatgatacaatctggggtgaattggaaacat |
118 |
Q |
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|||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20550 |
aaccagtgtattgtcttaagctacccgtgttttcattctctccctagaattgttgaagttgtcttatgccatgatacaatctggggtgaattggaaacat |
20451 |
T |
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| Q |
119 |
gggtttgagaattgctctatttaccatagggtaatgtcatgatttttatcttctcctagtattattgtaaattgtactgttcttgtagtatttaagtgaa |
218 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
20450 |
gggtttgagaattgctctatttatcatagggtaatgtcatgatttttatcttctcctagtattattgtaaattgtactgttcttgtagtatttatgtgaa |
20351 |
T |
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| Q |
219 |
atcttttagctgtttgttaatagtacagttatggtttgtgtgttttcgtgttaatattcagttttgctatgacttatgaataaggtaatgggactaactc |
318 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
20350 |
atctttgagctgtttgttaatagtacagttatggtttgtgtgttttcgtgttaatattcagttttgctatgac-tatgaataaggtaatgggactaactc |
20252 |
T |
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| Q |
319 |
ggttgattgttagtagcacaagttgacaatttttcttt |
356 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
20251 |
ggttgattgttagtagcacaagttgacaatttttcttt |
20214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0166; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 33 - 139
Target Start/End: Original strand, 33912 - 34010
Alignment:
| Q |
33 |
ctgaagctacctgtgttttcattatctccctagaattgttgaagttgtcttatgccatgatacaatctggggtgaattggaaacatgggtttgagaattg |
132 |
Q |
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| T |
33912 |
ctgaagctaccggtgttttcattctctccctagaattgttgaggttg--------catgatacaatctggggtgaattggaaacatgggtttaagaattg |
34003 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0166; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 229 - 304
Target Start/End: Original strand, 34056 - 34131
Alignment:
| Q |
229 |
tgtttgttaatagtacagttatggtttgtgtgttttcgtgttaatattcagttttgctatgacttatgaataaggt |
304 |
Q |
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|||||||||||||||| |||| | |||| ||||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
34056 |
tgtttgttaatagtactgttaagatttgcgtgttttcgtgttaatattcagttttgctttgacttgtgaataaggt |
34131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0166; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 340 - 400
Target Start/End: Complemental strand, 20195 - 20135
Alignment:
| Q |
340 |
gttgacaatttttcttttgtactaaatccagagaatattggttttttctagattacccatc |
400 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||| |
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| T |
20195 |
gttgacaatttttcttttgtactaaatctagagaatattggttttctttagattacccatc |
20135 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 306; Significance: 1e-172; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 19 - 356
Target Start/End: Complemental strand, 24778167 - 24777831
Alignment:
| Q |
19 |
aaccagtgtattgtctgaagctacctgtgttttcattatctccctagaattgttgaagttgtcttatgccatgatacaatctggggtgaattggaaacat |
118 |
Q |
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|||||||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24778167 |
aaccagtgtattgtcttaagctacccgtgttttcattctctccctagaattgttgaagttgtcttatgccatgatacaatctggggtgaattggaaacat |
24778068 |
T |
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| Q |
119 |
gggtttgagaattgctctatttaccatagggtaatgtcatgatttttatcttctcctagtattattgtaaattgtactgttcttgtagtatttaagtgaa |
218 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
24778067 |
gggtttgagaattgctctatttatcatagggtaatgtcatgatttttatcttctcctagtattattgtaaattgtactgttcttgtagtatttatgtgaa |
24777968 |
T |
|
| Q |
219 |
atcttttagctgtttgttaatagtacagttatggtttgtgtgttttcgtgttaatattcagttttgctatgacttatgaataaggtaatgggactaactc |
318 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
24777967 |
atctttgagctgtttgttaatagtacagttatggtttgtgtgttttcgtgttaatattcagttttgctatgac-tatgaataaggtaatgggactaactc |
24777869 |
T |
|
| Q |
319 |
ggttgattgttagtagcacaagttgacaatttttcttt |
356 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
24777868 |
ggttgattgttagtagcacaagttgacaatttttcttt |
24777831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 33 - 139
Target Start/End: Original strand, 24791529 - 24791627
Alignment:
| Q |
33 |
ctgaagctacctgtgttttcattatctccctagaattgttgaagttgtcttatgccatgatacaatctggggtgaattggaaacatgggtttgagaattg |
132 |
Q |
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||||||||||| ||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
24791529 |
ctgaagctaccggtgttttcattctctccctagaattgttgaggttg--------catgatacaatctggggtgaattggaaacatgggtttaagaattg |
24791620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 229 - 304
Target Start/End: Original strand, 24650601 - 24650676
Alignment:
| Q |
229 |
tgtttgttaatagtacagttatggtttgtgtgttttcgtgttaatattcagttttgctatgacttatgaataaggt |
304 |
Q |
| |
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|||||||||||||||| |||| | |||||||||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
24650601 |
tgtttgttaatagtactgttaagatttgtgtgttttcgtgttaatattcagttttgctttgacttgtgaataaggt |
24650676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 229 - 304
Target Start/End: Original strand, 24791673 - 24791748
Alignment:
| Q |
229 |
tgtttgttaatagtacagttatggtttgtgtgttttcgtgttaatattcagttttgctatgacttatgaataaggt |
304 |
Q |
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|||||||||||||||| |||| | |||| ||||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
24791673 |
tgtttgttaatagtactgttaagatttgcgtgttttcgtgttaatattcagttttgctttgacttgtgaataaggt |
24791748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 340 - 400
Target Start/End: Complemental strand, 24777812 - 24777752
Alignment:
| Q |
340 |
gttgacaatttttcttttgtactaaatccagagaatattggttttttctagattacccatc |
400 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||| |
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|
| T |
24777812 |
gttgacaatttttcttttgtactaaatctagagaatattggttttctttagattacccatc |
24777752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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