View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3529_low_1 (Length: 950)

Name: NF3529_low_1
Description: NF3529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3529_low_1
NF3529_low_1
[»] chr8 (2 HSPs)
chr8 (9-934)||(293878-294803)
chr8 (318-379)||(4561103-4561164)
[»] chr7 (1 HSPs)
chr7 (652-835)||(27491727-27491910)
[»] chr4 (2 HSPs)
chr4 (318-356)||(46676699-46676737)
chr4 (318-361)||(17912817-17912860)
[»] scaffold0167 (1 HSPs)
scaffold0167 (318-359)||(23493-23534)
[»] chr2 (2 HSPs)
chr2 (318-354)||(10084306-10084342)
chr2 (330-379)||(40149015-40149064)
[»] chr1 (4 HSPs)
chr1 (317-356)||(13031125-13031164)
chr1 (318-357)||(31626239-31626278)
chr1 (318-372)||(19809943-19809997)
chr1 (317-363)||(21641404-21641450)
[»] chr6 (1 HSPs)
chr6 (326-372)||(15544484-15544530)
[»] chr5 (2 HSPs)
chr5 (318-356)||(15844510-15844548)
chr5 (317-363)||(22198985-22199031)


Alignment Details
Target: chr8 (Bit Score: 890; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 890; E-Value: 0
Query Start/End: Original strand, 9 - 934
Target Start/End: Complemental strand, 294803 - 293878
Alignment:
Q  9 gaatatggtggatgttgaggaggaaaagagaggaagatccaaggcaacaaggttggaacccaaatctaaggataaagttattctaaaaaaggtatgcatc 108  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  294803 gaatgtggtggatgttgaggaggacaagagaggaagatccaaggcaacaaggttggaacccaaatctaaggataaagttattctaaaaaaggtatgcatc 294704  T
Q  109 attaacccctttcttgttgtctaaataaaattgaattttagtataaggtaggattctgcaatgtgaatgctcagagcaaccaaaacaggctatagcacag 208  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  294703 attaaccccttacttgttgtctaaataaaattgaattttagtataaggtaggattctgcaatgtgaatgctcagagcaaccaaaataggctatagcacag 294604  T
Q  209 accgacacctcggattgaagatgtgtccgcggcttggcatgacacatgtgattacattcaattatttggccacgacacatgtccggcttgttaacgttgg 308  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  294603 actgacacctcggattgaagatgtgtccgcggcttggcatgacacatgtgattacattcaattatttggccacgacacatgtccggcttgttaacgttgg 294504  T
Q  309 tgtagtgtctcttaaaatttgggttggacctaactcaatcctacaaaatcggcctgtgaggtgacgattgtttatcacttattgactcatgttcatgtga 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  294503 tgtagtgtctcttaaaatttgggttggacctaactcaatcctacaaaatcggcctgtgaggtgacgattgtttatcacttattgactcatgttcatgtga 294404  T
Q  409 tatctctttcaatgtgggacccttcacagtgtctatgtttaagttggtgcttcatagatcgggagcgttattgttttaaatttaagccatccatgcggct 508  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  294403 tatctctttcaatgtgggacccttcacagtgtctatgtttaagttggtgcttcatagatcgggagcgttattgttttaaatttaaaccatccatgcggct 294304  T
Q  509 ttacttaacatgcaacaactttagcttcttgaagaattgttgatttctgatttgttctgtattctgcattcttataaaattctgtttttaatgattaagg 608  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  294303 ttacttaacatgcaacaactttagcttcttgaagaattgttgatttctgatttgttctgtattctgcattcttataaaattctgtttttaatgattaagg 294204  T
Q  609 agataaaagattagaaagtctatttgcagctgactaattgaatatgcaggttaagattggaattcaaggggctgaagaatttggtgaatttgaggaatgg 708  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  294203 agataaaagattagaaagtctatttgcagctgactaattgaatatgcaggttaagattggaattcaaggggctgaagaatttggtgaatttgaggaatgg 294104  T
Q  709 ttcaattaccggctatctagagcagcacctgaaacctgtgctgacttccttggaagttttgtggctgataaaacaaactcacagttcacaaaaggtggaa 808  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  294103 ttcaattaccggctatctagagcagcacctgaaacatgtgctgacttccttggaagttttgtggctgataaaacaaactcacagttcacaaaaggtggaa 294004  T
Q  809 aatggcttgtttggaaatttgaggtgccttggctcatatttcgatcgtattatttaacattaatagccttaaattacccagacataaattactcaaatgt 908  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  294003 aatggcttgtttggaaatttgaggtgccttggctcatattttgatcgtattatttaacattaatagccttaaattacccagacataaattactcaaatgt 293904  T
Q  909 ctaaagttttattacctgtacttcat 934  Q
    ||||||||||||||| ||||||||||    
T  293903 ctaaagttttattacttgtacttcat 293878  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 318 - 379
Target Start/End: Original strand, 4561103 - 4561164
Alignment:
Q  318 tcttaaaatttgggttggacctaactcaatcctacaaaatcggcctgtgaggtgacgattgt 379  Q
    ||||| |||||||| || ||||||||| | |||||||||||||| ||| |||||| ||||||    
T  4561103 tcttataatttgggatgaacctaactctaccctacaaaatcggcttgttaggtgatgattgt 4561164  T

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Target: chr7 (Bit Score: 92; Significance: 3e-44; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 3e-44
Query Start/End: Original strand, 652 - 835
Target Start/End: Original strand, 27491727 - 27491910
Alignment:
Q  652 atgcaggttaagattggaattcaaggggctgaagaatttggtgaatttgaggaatggttcaattaccggctatctagagcagcacctgaaacctgtgctg 751  Q
    |||||||| ||| |||||||| |||| ||| ||||||||||||| | ||| || |||||||||||  | || || |||||||| |||||||| |||||      
T  27491727 atgcaggtgaaggttggaattgaaggagctaaagaatttggtgattatgaagagtggttcaattatagactctcaagagcagctcctgaaacatgtgcca 27491826  T
Q  752 acttccttggaagttttgtggctgataaaacaaactcacagttcacaaaaggtggaaaatggcttgtttggaaatttgaggtgc 835  Q
    | ||||||||||||||||| ||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  27491827 agttccttggaagttttgtagctgataaaaccaattcacaattcacaaaaggtggaaaatggcttgtttggaaatttgaggtgc 27491910  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 318 - 356
Target Start/End: Complemental strand, 46676737 - 46676699
Alignment:
Q  318 tcttaaaatttgggttggacctaactcaatcctacaaaa 356  Q
    ||||||||||||||||||||||||||||| |||||||||    
T  46676737 tcttaaaatttgggttggacctaactcaaccctacaaaa 46676699  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 318 - 361
Target Start/End: Complemental strand, 17912860 - 17912817
Alignment:
Q  318 tcttaaaatttgggttggacctaactcaatcctacaaaatcggc 361  Q
    |||||||||||||||||| |||||||||| ||||||||| ||||    
T  17912860 tcttaaaatttgggttgggcctaactcaaccctacaaaaccggc 17912817  T

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Target: scaffold0167 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 318 - 359
Target Start/End: Complemental strand, 23534 - 23493
Alignment:
Q  318 tcttaaaatttgggttggacctaactcaatcctacaaaatcg 359  Q
    |||||||| ||| |||||||||||||||||||||||||||||    
T  23534 tcttaaaaattgagttggacctaactcaatcctacaaaatcg 23493  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 318 - 354
Target Start/End: Complemental strand, 10084342 - 10084306
Alignment:
Q  318 tcttaaaatttgggttggacctaactcaatcctacaa 354  Q
    |||||||||||||||||||| ||||||||||||||||    
T  10084342 tcttaaaatttgggttggacataactcaatcctacaa 10084306  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 330 - 379
Target Start/End: Original strand, 40149015 - 40149064
Alignment:
Q  330 ggttggacctaactcaatcctacaaaatcggcctgtgaggtgacgattgt 379  Q
    ||||||||||||| ||| || ||||||||||| |||||||||| ||||||    
T  40149015 ggttggacctaacacaaccccacaaaatcggcttgtgaggtgaggattgt 40149064  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 317 - 356
Target Start/End: Original strand, 13031125 - 13031164
Alignment:
Q  317 ctcttaaaatttgggttggacctaactcaatcctacaaaa 356  Q
    |||||| ||||||||||||||||||||||| |||||||||    
T  13031125 ctcttagaatttgggttggacctaactcaaccctacaaaa 13031164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 318 - 357
Target Start/End: Original strand, 31626239 - 31626278
Alignment:
Q  318 tcttaaaatttgggttggacctaactcaatcctacaaaat 357  Q
    ||||| ||||||||||||||||||||||| ||||||||||    
T  31626239 tcttagaatttgggttggacctaactcaaccctacaaaat 31626278  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 318 - 372
Target Start/End: Original strand, 19809943 - 19809997
Alignment:
Q  318 tcttaaaatttgggttggacctaactcaatcctacaaaatcggcctgtgaggtga 372  Q
    ||||||| |||||||||| |||||||||| | |||||||||||| ||| ||||||    
T  19809943 tcttaaattttgggttgggcctaactcaaccttacaaaatcggcttgtaaggtga 19809997  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 317 - 363
Target Start/End: Original strand, 21641404 - 21641450
Alignment:
Q  317 ctcttaaaatttgggttggacctaactcaatcctacaaaatcggcct 363  Q
    ||||||||||||||||||| |||||||||| | ||||||| ||||||    
T  21641404 ctcttaaaatttgggttgggcctaactcaaccttacaaaaccggcct 21641450  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 326 - 372
Target Start/End: Original strand, 15544484 - 15544530
Alignment:
Q  326 tttgggttggacctaactcaatcctacaaaatcggcctgtgaggtga 372  Q
    |||||||||||||||||| |||| ||||||| |||| ||||||||||    
T  15544484 tttgggttggacctaactgaatcttacaaaaccggcttgtgaggtga 15544530  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 318 - 356
Target Start/End: Original strand, 15844510 - 15844548
Alignment:
Q  318 tcttaaaatttgggttggacctaactcaatcctacaaaa 356  Q
    |||||||||||||||||| |||||||||||| |||||||    
T  15844510 tcttaaaatttgggttgggcctaactcaatcttacaaaa 15844548  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 317 - 363
Target Start/End: Original strand, 22198985 - 22199031
Alignment:
Q  317 ctcttaaaatttgggttggacctaactcaatcctacaaaatcggcct 363  Q
    ||||||||||||||||||| |||||||||| | ||||||| ||||||    
T  22198985 ctcttaaaatttgggttgggcctaactcaaccttacaaaaccggcct 22199031  T

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