View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3529_low_10 (Length: 309)
Name: NF3529_low_10
Description: NF3529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3529_low_10 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 267; Significance: 1e-149; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 16 - 309
Target Start/End: Complemental strand, 889044 - 888748
Alignment:
| Q |
16 |
atggttgaatctatttagtaatgataaagactc---ggtaccggtaattgtgtagttaatgagtaatgacactgtctctttattgtattaggttatgtaa |
112 |
Q |
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| T |
889044 |
atggttgaatctatttagtaatgataaagacacatgggtaccggtaattgtgtagttaatgagtaatgacactgtctttttactgtattaggttatgtaa |
888945 |
T |
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| Q |
113 |
ttgaatatccctctgcattgcatgattagtgagagtaatatgcaaacagattaaatttctgttggtttttgaattttcagttttcagatgaagtgtttgt |
212 |
Q |
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| T |
888944 |
ttgaatatccctctgcattgcatgattagtgagagtaatatgcaaacagattaaatttctgttggtttttgaattttcagttttcagatgaagtgtttgt |
888845 |
T |
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| Q |
213 |
ttggtttcttatgttataacggtagtaacttgagtccaatctgaagaacatgttatttgcatttatctcaccttgcgttgaatttgctttagtgttt |
309 |
Q |
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| T |
888844 |
ttggtttcttatgttataacggtagtaacttgagtccaatctgaagaacatgttatttgcatttatctcaccgtgcgttgaatttgctttagtgttt |
888748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 16 - 309
Target Start/End: Original strand, 913372 - 913668
Alignment:
| Q |
16 |
atggttgaatctatttagtaatgataaagactc---ggtaccggtaattgtgtagttaatgagtaatgacactgtctctttattgtattaggttatgtaa |
112 |
Q |
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| T |
913372 |
atggttgaatctatttagtaatgataaagacacatgggtaccggtaattgtgtagttaatgagtaatgacactgtctttttactgtattaggttatgtaa |
913471 |
T |
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| Q |
113 |
ttgaatatccctctgcattgcatgattagtgagagtaatatgcaaacagattaaatttctgttggtttttgaattttcagttttcagatgaagtgtttgt |
212 |
Q |
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| T |
913472 |
ttgaatatccctctgcattgcatgattagtgagagtaatatgcaaacagattaaatttctgttggtttttgaattttcagttttcagatgaagtgtttgt |
913571 |
T |
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| Q |
213 |
ttggtttcttatgttataacggtagtaacttgagtccaatctgaagaacatgttatttgcatttatctcaccttgcgttgaatttgctttagtgttt |
309 |
Q |
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| T |
913572 |
ttggtttcttatgttataacggtagtaacttgagtccaatctgaagaacatgttatttgcatttatctcaccgtgcgttgaatttgctttagtgttt |
913668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 200 - 293
Target Start/End: Original strand, 1002403 - 1002496
Alignment:
| Q |
200 |
atgaagtgtttgtttggtttcttatgttataacggtagtaacttgagtccaatctgaagaacatgttatttgcatttatctcaccttgcgttga |
293 |
Q |
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| T |
1002403 |
atgaagtgcttgtttggtttcttatattataacggtagtaactcgcgtccaatctgatgatcatgttatttgctttcatctcaccgtgcattga |
1002496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 47 - 81
Target Start/End: Original strand, 1002155 - 1002189
Alignment:
| Q |
47 |
tcggtaccggtaattgtgtagttaatgagtaatga |
81 |
Q |
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| T |
1002155 |
tcggtaccggtaattgtgtagttaatgagtaatga |
1002189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 246 - 293
Target Start/End: Original strand, 913739 - 913786
Alignment:
| Q |
246 |
gtccaatctgaagaacatgttatttgcatttatctcaccttgcgttga |
293 |
Q |
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| T |
913739 |
gtccaatctgaagttcatgttattcgcatttatctcaccgtgcgttga |
913786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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