View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3529_low_12 (Length: 290)
Name: NF3529_low_12
Description: NF3529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3529_low_12 |
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| [»] scaffold1415 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 19 - 282
Target Start/End: Original strand, 2760430 - 2760693
Alignment:
| Q |
19 |
caatctccaaaaaataatatttcattcaactgcaagtcatcggaatttaaatgtttccataaaagctaatcaagtttatcctccaaagaataatgacaag |
118 |
Q |
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| T |
2760430 |
caatctccaaaaaataatatttcattcaactgcaagtcatcggaatttgaatgtttccataaaagctaatcaagtttatcctccaaagaataatgacaag |
2760529 |
T |
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| Q |
119 |
attcaaaattttaggtaaagaagtaaaaagctaaattagttgtggaggaaagttccagtgattgcagatagtcatctacagtggaaaccaatctcttact |
218 |
Q |
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| T |
2760530 |
attcaaaattttaggtaaagaagtaaaaagctaaattagttgtggaggaaagttccaatgattgcagatagtcatctacagtggaaaccaatctcttact |
2760629 |
T |
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| Q |
219 |
aagagcattatgcaagttaattatcgtatgtcatagatataggaaaacggtttattttcatctc |
282 |
Q |
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| T |
2760630 |
aagagcattatgcaagttaattatcgtatgtcatagatatagaaaaacggtttattttcatctc |
2760693 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 282
Target Start/End: Original strand, 40373355 - 40373392
Alignment:
| Q |
245 |
tatgtcatagatataggaaaacggtttattttcatctc |
282 |
Q |
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| T |
40373355 |
tatgtcatagatataggaaaacagtttatgttcatctc |
40373392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1415 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold1415
Description:
Target: scaffold1415; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 250 - 282
Target Start/End: Original strand, 1650 - 1682
Alignment:
| Q |
250 |
catagatataggaaaacggtttattttcatctc |
282 |
Q |
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| T |
1650 |
catagatataggaaaacagtttattttcatctc |
1682 |
T |
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