View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3529_low_14 (Length: 261)
Name: NF3529_low_14
Description: NF3529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3529_low_14 |
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| [»] scaffold0166 (1 HSPs) |
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Alignment Details
Target: scaffold0166 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: scaffold0166
Description:
Target: scaffold0166; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 6 - 222
Target Start/End: Original strand, 19684 - 19900
Alignment:
| Q |
6 |
agaagcaaaggagatcgcagaaattaaaccactcttcaattcacgtaacaattcaccaagatgttgtttcgttgaaattgaaacaagtaatggctctagc |
105 |
Q |
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| T |
19684 |
agaagaaaaggagatcgcagaaattaaaccactcttcaattcacgtaacaattcaccaagatgttgtttcgttgaaattgaaacaagtaatggctctagc |
19783 |
T |
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| Q |
106 |
actcacaatgaaattgaaagaacatgtgatgaatatgtgagtggagtaatgaatcaattggaacaaagcaatttgagaataaattttgaaatcttagggg |
205 |
Q |
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| T |
19784 |
actcacaatgaaattgaaagaacatgtgatgaatatgtgagtagagtaatgaatcaattggaacaaagcaatttgagaataaattttgaaatcttagggg |
19883 |
T |
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| Q |
206 |
ctgcgctcatgctaggt |
222 |
Q |
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| T |
19884 |
ctgcgctcatgctaggt |
19900 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 6 - 222
Target Start/End: Original strand, 24777301 - 24777517
Alignment:
| Q |
6 |
agaagcaaaggagatcgcagaaattaaaccactcttcaattcacgtaacaattcaccaagatgttgtttcgttgaaattgaaacaagtaatggctctagc |
105 |
Q |
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| T |
24777301 |
agaagaaaaggagatcgcagaaattaaaccactcttcaattcacgtaacaattcaccaagatgttgtttcgttgaaattgaaacaagtaatggctctagc |
24777400 |
T |
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| Q |
106 |
actcacaatgaaattgaaagaacatgtgatgaatatgtgagtggagtaatgaatcaattggaacaaagcaatttgagaataaattttgaaatcttagggg |
205 |
Q |
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| T |
24777401 |
actcacaatgaaattgaaagaacatgtgatgaatatgtgagtagagtaatgaatcaattggaacaaagcaatttgagaataaattttgaaatcttagggg |
24777500 |
T |
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| Q |
206 |
ctgcgctcatgctaggt |
222 |
Q |
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| T |
24777501 |
ctgcgctcatgctaggt |
24777517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 157 - 241
Target Start/End: Complemental strand, 10430867 - 10430785
Alignment:
| Q |
157 |
aatcaattggaacaaagcaatttgagaataaattttgaaatcttaggggctgcgctcatgctaggtgcaaaccctagcagagcga |
241 |
Q |
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| T |
10430867 |
aatcaattgaaacaaagcaatttggtgatgaatttgaaaat--taggggctgcgctcatgctaggtgcaaaccctagaagagcga |
10430785 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 101 - 151
Target Start/End: Complemental strand, 30730090 - 30730040
Alignment:
| Q |
101 |
ctagcactcacaatgaaattgaaagaacatgtgatgaatatgtgagtggag |
151 |
Q |
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| T |
30730090 |
ctagcactcacaatgaatttgaatgagcaagtaatgaatatgtgagtggag |
30730040 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 246
Target Start/End: Complemental strand, 24315232 - 24315189
Alignment:
| Q |
203 |
gggctgcgctcatgctaggtgcaaaccctagcagagcgaatcat |
246 |
Q |
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| T |
24315232 |
gggcagcgctcatgctaggtgcaaactctagcagagcgattcat |
24315189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 204 - 247
Target Start/End: Original strand, 16600825 - 16600868
Alignment:
| Q |
204 |
ggctgcgctcatgctaggtgcaaaccctagcagagcgaatcatg |
247 |
Q |
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| T |
16600825 |
ggctgcgctcttgctaggtgcaaaccctaacagagcgattcatg |
16600868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 207 - 241
Target Start/End: Complemental strand, 7653168 - 7653134
Alignment:
| Q |
207 |
tgcgctcatgctaggtgcaaaccctagcagagcga |
241 |
Q |
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| T |
7653168 |
tgcgctcttgctaggtgcaaaccctagcagagcga |
7653134 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 239
Target Start/End: Original strand, 27541074 - 27541110
Alignment:
| Q |
203 |
gggctgcgctcatgctaggtgcaaaccctagcagagc |
239 |
Q |
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| T |
27541074 |
gggctgcgctcttgctaggtgcaaaccctagtagagc |
27541110 |
T |
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