View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF3529_low_16 (Length: 248)

Name: NF3529_low_16
Description: NF3529
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF3529_low_16
NF3529_low_16
[»] chr4 (5 HSPs)
chr4 (137-235)||(37809333-37809431)
chr4 (141-218)||(37646380-37646457)
chr4 (141-218)||(37814386-37814463)
chr4 (72-139)||(37809461-37809529)
chr4 (189-222)||(51590193-51590226)


Alignment Details
Target: chr4 (Bit Score: 91; Significance: 3e-44; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 137 - 235
Target Start/End: Complemental strand, 37809431 - 37809333
Alignment:
Q  137 agtcataaggttagaagaaggtattaattaaaaattaaaatcatattctctaacattctgctacatgcaattacaataaagattcaataaagaacatct 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  37809431 agtcataaggttagaagaaggtattaattaaaaattaaaatcatattctctaacattctgctacatgcaattacaatacagattcaattaagaacatct 37809333  T

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Target: chr4; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 141 - 218
Target Start/End: Original strand, 37646380 - 37646457
Alignment:
Q  141 ataaggttagaagaaggtattaattaaaaattaaaatcatattctctaacattctgctacatgcaattacaataaaga 218  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37646380 ataaggttactagaaggtattaattaaaaattaaaatcatattctctaacattctgctacatgcaattacaataaaga 37646457  T

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Target: chr4; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 141 - 218
Target Start/End: Complemental strand, 37814463 - 37814386
Alignment:
Q  141 ataaggttagaagaaggtattaattaaaaattaaaatcatattctctaacattctgctacatgcaattacaataaaga 218  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37814463 ataaggttactagaaggtattaattaaaaattaaaatcatattctctaacattctgctacatgcaattacaataaaga 37814386  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 72 - 139
Target Start/End: Complemental strand, 37809529 - 37809461
Alignment:
Q  72 tgtaactaactgactgcattctaactaactttact-aacagatgacagttagggagttaggcagttagt 139  Q
    ||||||||||||| ||||||||||| |||||| || ||| | |||||||||||||||| ||||||||||    
T  37809529 tgtaactaactgattgcattctaaccaacttttctaaacggctgacagttagggagttcggcagttagt 37809461  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 222
Target Start/End: Complemental strand, 51590226 - 51590193
Alignment:
Q  189 acattctgctacatgcaattacaataaagattca 222  Q
    |||||||| |||||||||||||||||||||||||    
T  51590226 acattctgttacatgcaattacaataaagattca 51590193  T

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