View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3530_high_1 (Length: 515)
Name: NF3530_high_1
Description: NF3530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3530_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 394; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 10 - 480
Target Start/End: Original strand, 1134013 - 1134484
Alignment:
| Q |
10 |
acatcatcatgccttcttcatcactaaacaaagtccctgatgacgtggccttcacaagttcctttgcttcactctttaaatataccaaattccattcaca |
109 |
Q |
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| T |
1134013 |
acatcatcatgccttcttcatcactaaacaaagtccctgatgacgtggccttcacaagttcctttgcttcaccctttaaatataccaaattccattcaca |
1134112 |
T |
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| Q |
110 |
tnnnnnnnnnn-ctctattctattcaatcttaattctttgatttggagatcaaaagctctatgacaaaaccacaggtttcatgcttgctttctttttggt |
208 |
Q |
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| T |
1134113 |
taaaaaaaaaaactctattctattcaatcttaattctttgatttggagatcaaaagctctatcacaaaaccacaggtttcatgcttgctttctttttggt |
1134212 |
T |
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| Q |
209 |
agaattacggttaatcactaaaatattattaatttaggattacaacaaaatcagatgttactgtgatttcgtcaaattcatgcacttcatagatatactt |
308 |
Q |
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| T |
1134213 |
agaattacggttaatcactaaaatattattaatttagaatttcaacaaaatcagatgttattgtgatttcgtcaaattcatgcacttcatagatatactt |
1134312 |
T |
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| Q |
309 |
caaccgaatttattattttctcataaagttacttaaacatattaaccctccaacaactggaatatctctaatcactaattattaacattagataagacaa |
408 |
Q |
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| T |
1134313 |
caaccaaatttattattttgtcataaagttacttacacatattaaccctccaacaactggaatatctctaatcactaattattaacattagataagacaa |
1134412 |
T |
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| Q |
409 |
gatagagctataaaatacatcaattataaacattgatttgattgggaaagagaattaaaaaatagaaattta |
480 |
Q |
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| T |
1134413 |
gatagagctataaaatatatcaattataaacatcgatttgattgggaaagagaattaaaaaatagaaattta |
1134484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 474 - 513
Target Start/End: Complemental strand, 1133342 - 1133303
Alignment:
| Q |
474 |
aaatttagtaagatgaattaggttaccctatgctactcct |
513 |
Q |
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| T |
1133342 |
aaatttagtaagatgaattaggttaccctatgcttctcct |
1133303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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