View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF3530_high_2 (Length: 369)
Name: NF3530_high_2
Description: NF3530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3530_high_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 17)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 21 - 352
Target Start/End: Complemental strand, 8412724 - 8412393
Alignment:
| Q |
21 |
acacaaatattacaagatcaacaacaaaagcattgtacaatttctaatgctacagttcaactctatgcagtcttggaagctgtatcagacagaatagaaa |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8412724 |
acacaaatattacaagatcaacaacaaaagcattctacaatttctaatgctacagttcaactctatgcagtcttggaagctgtatcagacagaatagaaa |
8412625 |
T |
|
| Q |
121 |
tgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaataaatatgattactctcactgctacaaccatgtctggtgttgc |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8412624 |
tgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaataaatatgattactctcactgctacaaccatgtctggtgttgc |
8412525 |
T |
|
| Q |
221 |
agctgtcacaagcggggaaggtgcaccacttatggctatgaaactgtcctctgctcttttattctctgctgccactggattattgcttatcatgaacaaa |
320 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
8412524 |
agctgtcacaaacggggaaggtgcaccacttatggctatgaaactgtcctctgctcttttattctctgctgccactggattattgtttatcatgaacaaa |
8412425 |
T |
|
| Q |
321 |
atccaaccctctcaactcacagaggaacaaag |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
8412424 |
atccaaccctctcaactcacagaggaacaaag |
8412393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 21 - 352
Target Start/End: Complemental strand, 8434822 - 8434491
Alignment:
| Q |
21 |
acacaaatattacaagatcaacaacaaaagcattgtacaatttctaatgctacagttcaactctatgcagtcttggaagctgtatcagacagaatagaaa |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8434822 |
acacaaatattacaagatcaacaacaaaagcattctacaatttctaatgctacagttcaactctatgcagtcttggaagctgtatcagacagaatagaaa |
8434723 |
T |
|
| Q |
121 |
tgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaataaatatgattactctcactgctacaaccatgtctggtgttgc |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8434722 |
tgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaataaatatgattactctcactgctacaaccatgtctggtgttgc |
8434623 |
T |
|
| Q |
221 |
agctgtcacaagcggggaaggtgcaccacttatggctatgaaactgtcctctgctcttttattctctgctgccactggattattgcttatcatgaacaaa |
320 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
8434622 |
agctgtcacaaacggggaaggtgcaccacttatggctatgaaactgtcctctgctcttttattctctgctgccactggattattgtttatcatgaacaaa |
8434523 |
T |
|
| Q |
321 |
atccaaccctctcaactcacagaggaacaaag |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
8434522 |
atccaaccctctcaactcacagaggaacaaag |
8434491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 65 - 352
Target Start/End: Complemental strand, 8406560 - 8406273
Alignment:
| Q |
65 |
taatgctacagttcaactctatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatctt |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8406560 |
taatgctacagttcaactctatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatctt |
8406461 |
T |
|
| Q |
165 |
ctattaaactcaataaatatgattactctcactgctacaaccatgtctggtgttgcagctgtcacaagcggggaaggtgcaccacttatggctatgaaac |
264 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
8406460 |
ctattaaactcaataaatatgattactctcactgctacaaccatgtctggtgttgcagctgtcacaaacggggaaggtgcaccacttatggctatgaaac |
8406361 |
T |
|
| Q |
265 |
tgtcctctgctcttttattctctgctgccactggattattgcttatcatgaacaaaatccaaccctctcaactcacagaggaacaaag |
352 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8406360 |
tgtcctctgctcttttattctctgctgccactggattattgcttatcatgaacaaaatccaaccctctcaactcacagaggaacaaag |
8406273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 21 - 306
Target Start/End: Original strand, 8394725 - 8395010
Alignment:
| Q |
21 |
acacaaatattacaagatcaacaacaaaagcattgtacaatttctaatgctacagttcaactctatgcagtcttggaagctgtatcagacagaatagaaa |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8394725 |
acacaaatattacaagatcaacaacaaaagcattctacaaattctaatgctacagttcaactctatgcagtcttggaagctgtatcagacagaatagaaa |
8394824 |
T |
|
| Q |
121 |
tgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaataaatatgattactctcactgctacaaccatgtctggtgttgc |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8394825 |
tgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaataaatatgattactctcactgctacaaccatgtctggtgttgc |
8394924 |
T |
|
| Q |
221 |
agctgtcacaagcggggaaggtgcaccacttatggctatgaaactgtcctctgctcttttattctctgctgccactggattattgc |
306 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8394925 |
agctgtcacaaacggggaaggtgcaccacttatggctatgaaactgtcctctgctcttttattctctgctgccactggattattgc |
8395010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 65 - 352
Target Start/End: Original strand, 8395012 - 8395299
Alignment:
| Q |
65 |
taatgctacagttcaactctatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatctt |
164 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8395012 |
taatgctacagttcaactctatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatctt |
8395111 |
T |
|
| Q |
165 |
ctattaaactcaataaatatgattactctcactgctacaaccatgtctggtgttgcagctgtcacaagcggggaaggtgcaccacttatggctatgaaac |
264 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
8395112 |
ctattaaactcaataaaaatgattactctcactgctacaaccatgtctggagttgcagctgtcacaaacggggaaggtgcaccacttatggctatgaaac |
8395211 |
T |
|
| Q |
265 |
tgtcctctgctcttttattctctgctgccactggattattgcttatcatgaacaaaatccaaccctctcaactcacagaggaacaaag |
352 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8395212 |
tgtcctctgctcttttattctctgctgccactggattattgattatcatgaacaaaatccaaccctctcaactcacagaggaacaaag |
8395299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 10 - 353
Target Start/End: Complemental strand, 8431758 - 8431420
Alignment:
| Q |
10 |
acatcatcaaaacacaaatattacaagatcaacaacaaaagcattgtacaatttctaatgctacagttcaactctatgcagtcttggaagctgtatcaga |
109 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||||||||||| ||||| |||||| || ||| |||||||||| |||| || |||||||||||||| |
|
|
| T |
8431758 |
acatcaacaaaacagaaatattacaagatcaacaacaaaagcattctacaaattctaaagccacaattcaactcta--cagttttagaagctgtatcaga |
8431661 |
T |
|
| Q |
110 |
cagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaataaatatgattactctcactgctacaaccatg |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||| ||||||||||||||||||| || ||| |
|
|
| T |
8431660 |
cagaatagaaatgcatcacaacattggcgaac---gtaacaactggaataatcttcttttgaactcaataaacatgattactctcactgctaagactatg |
8431564 |
T |
|
| Q |
210 |
tctggtgttgcagctgtcacaagcggggaaggtgcaccacttatggctatgaaactgtcctctgctcttttattctctgctgccactggattattgctta |
309 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||||| ||||| ||||||| || |||||||| | || || || |||| ||||| ||||||| |
|
|
| T |
8431563 |
tctggtgttgcagctgtcacaagtggggaagttgcaccacttttggctctgaaactatcttctgctctcctgttttcggcagccaacggattgttgctta |
8431464 |
T |
|
| Q |
310 |
tcatgaacaaaatccaaccctctcaactcacagaggaacaaagg |
353 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
8431463 |
tcatgaacaaaatccaaccctctcaactcacagaagaacaaagg |
8431420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 84 - 335
Target Start/End: Complemental strand, 8417882 - 8417625
Alignment:
| Q |
84 |
tatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaataaata |
183 |
Q |
| |
|
|||||||||||||||| ||| || |||||||| |||||||||||||||||| | |||| ||||||||| ||||| | |||||| || || || || || | |
|
|
| T |
8417882 |
tatgcagtcttggaagttgtttctgacagaattgaaatgcatcacaacatttgtgaactacgtaacaattggaacactcttctcttgaattccatcaaca |
8417783 |
T |
|
| Q |
184 |
tgattactctcactgctacaaccatgtctggtgttgcag---ctgt---cacaagcggggaaggtgcaccacttatggctatgaaactgtcctctgctct |
277 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| | |||| ||| | | || | || ||||| ||||| |||| | || |||||||| |
|
|
| T |
8417782 |
tgattactctcactgctacaaccatgtctggtcttgctgctactgttcccactacttgctcagattcatcacttttggctttgaagttatcttctgctct |
8417683 |
T |
|
| Q |
278 |
tttattctctgctgccactggattattgcttatcatgaacaaaatccaaccctctcaa |
335 |
Q |
| |
|
||| || ||||| ||||| ||||| |||||||||||||||||||||||||| |||||| |
|
|
| T |
8417682 |
tttgttttctgcagccaccggattgttgcttatcatgaacaaaatccaaccttctcaa |
8417625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 84 - 220
Target Start/End: Original strand, 8375339 - 8375475
Alignment:
| Q |
84 |
tatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaataaata |
183 |
Q |
| |
|
|||||| |||||||||| || || || ||| | ||||||||||| |||||||||||||| |||||||| ||||| | |||||| || ||||| || || | |
|
|
| T |
8375339 |
tatgcaatcttggaagcagtttctgatagagttgaaatgcatcaaaacattggcgaacagcgtaacaattggaacactcttctcttgaactccatcaaca |
8375438 |
T |
|
| Q |
184 |
tgattactctcactgctacaaccatgtctggtgttgc |
220 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |
|
|
| T |
8375439 |
tgattactcttactgctacaaccatgtctggtgttgc |
8375475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 84 - 220
Target Start/End: Complemental strand, 8439764 - 8439628
Alignment:
| Q |
84 |
tatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaataaata |
183 |
Q |
| |
|
|||||| |||||||||| || || || ||| | ||||||||||| |||||||||||||| |||| ||| ||||| | |||||| || ||||| || || | |
|
|
| T |
8439764 |
tatgcaatcttggaagcagtttctgatagagttgaaatgcatcaaaacattggcgaacagcgtagcaattggaacactcttctcttgaactccatcaaca |
8439665 |
T |
|
| Q |
184 |
tgattactctcactgctacaaccatgtctggtgttgc |
220 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| |
|
|
| T |
8439664 |
tgattactcttactgctacaaccatgtctggtgttgc |
8439628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 270 - 352
Target Start/End: Original strand, 8375531 - 8375613
Alignment:
| Q |
270 |
tctgctcttttattctctgctgccactggattattgcttatcatgaacaaaatccaaccctctcaactcacagaggaacaaag |
352 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||| | | ||||||||||| |
|
|
| T |
8375531 |
tctgctcttttattctctgcagccactggattgttgcttatcatgaacaaaatccaaccttctcaattggccgaggaacaaag |
8375613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 270 - 352
Target Start/End: Complemental strand, 8439572 - 8439490
Alignment:
| Q |
270 |
tctgctcttttattctctgctgccactggattattgcttatcatgaacaaaatccaaccctctcaactcacagaggaacaaag |
352 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||| | | ||||||||||| |
|
|
| T |
8439572 |
tctgctcttttattctctgcagccactggattgttgcttatcatgaacaaaatccaaccttctcaattggccgaggaacaaag |
8439490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 77 - 196
Target Start/End: Complemental strand, 8368931 - 8368812
Alignment:
| Q |
77 |
tcaactctatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactca |
176 |
Q |
| |
|
||||||||||||| | | ||| ||||||| |||||||||||||||||||| ||||||||||||||||| | || ||||||| |||||||||||||| |
|
|
| T |
8368931 |
tcaactctatgcaattcttgaatctgtatccgacagaatagaaatgcatcaaaacattggcgaacaacgcgataattggaatacccttctattaaactcc |
8368832 |
T |
|
| Q |
177 |
ataaatatgattactctcac |
196 |
Q |
| |
|
|| || ||||| |||||||| |
|
|
| T |
8368831 |
atcaacatgatcactctcac |
8368812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 77 - 196
Target Start/End: Original strand, 8400479 - 8400598
Alignment:
| Q |
77 |
tcaactctatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactca |
176 |
Q |
| |
|
||||||||||||| | | ||| ||||||| |||||||||||||||||||| ||||||||||||||||| | || ||||||| |||||||||||||| |
|
|
| T |
8400479 |
tcaactctatgcaattcttgaatctgtatccgacagaatagaaatgcatcaaaacattggcgaacaacgcgataattggaatacccttctattaaactcc |
8400578 |
T |
|
| Q |
177 |
ataaatatgattactctcac |
196 |
Q |
| |
|
|| || ||||| |||||||| |
|
|
| T |
8400579 |
atcaacatgatcactctcac |
8400598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 77 - 196
Target Start/End: Original strand, 8422056 - 8422175
Alignment:
| Q |
77 |
tcaactctatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactca |
176 |
Q |
| |
|
||||||||||||| | | ||| ||||||| |||||||||||||||||||| ||||||||||||||||| | || ||||||| |||||||||||||| |
|
|
| T |
8422056 |
tcaactctatgcaattcttgaatctgtatccgacagaatagaaatgcatcaaaacattggcgaacaacgcgataattggaatacccttctattaaactcc |
8422155 |
T |
|
| Q |
177 |
ataaatatgattactctcac |
196 |
Q |
| |
|
|| || ||||| |||||||| |
|
|
| T |
8422156 |
atcaacatgatcactctcac |
8422175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 306 - 353
Target Start/End: Complemental strand, 41119301 - 41119254
Alignment:
| Q |
306 |
cttatcatgaacaaaatccaaccctctcaactcacagaggaacaaagg |
353 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
41119301 |
cttatcatgaacaaaccccaaccctctcaactcacagaggaacaaagg |
41119254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 242 - 353
Target Start/End: Complemental strand, 8404444 - 8404331
Alignment:
| Q |
242 |
tgcaccacttatggctatgaaactgtc--ctctgctcttttattctctgctgccactggattattgcttatcatgaacaaaatccaaccctctcaactca |
339 |
Q |
| |
|
|||||| ||| ||||| ||||||| || ||||||| | ||||| ||||| ||||||||| |||| ||| | ||||||||||||||||| || ||||| |
|
|
| T |
8404444 |
tgcaccccttctggctttgaaactatcttctctgctatgttattttctgccgccactggaatattacttgtgatgaacaaaatccaaccttcacaacttg |
8404345 |
T |
|
| Q |
340 |
cagaggaacaaagg |
353 |
Q |
| |
|
|||| ||||||||| |
|
|
| T |
8404344 |
cagaagaacaaagg |
8404331 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 79 - 213
Target Start/End: Complemental strand, 8404604 - 8404470
Alignment:
| Q |
79 |
aactctatgcagtcttggaagctgtatcagacagaatagaaatgcatcacaacattggcgaacaacgtaacaactggaataatcttctattaaactcaat |
178 |
Q |
| |
|
||||||||||| | | ||| ||||||||||||||||| ||||||||| | ||| | || |||||||| |||| ||||| | ||| |||||||||| || |
|
|
| T |
8404604 |
aactctatgcaatttcggaggctgtatcagacagaattgaaatgcataaaaacttaggacaacaacgtgacaattggaacacgcttttattaaactccat |
8404505 |
T |
|
| Q |
179 |
aaatatgattactctcactgctacaaccatgtctg |
213 |
Q |
| |
|
|| ||||| || ||||| ||| |||| ||||||| |
|
|
| T |
8404504 |
caacatgataacactcacagcttcaacaatgtctg |
8404470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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