View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF3530_low_2 (Length: 387)
Name: NF3530_low_2
Description: NF3530
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF3530_low_2 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 170 - 387
Target Start/End: Original strand, 32343603 - 32343820
Alignment:
| Q |
170 |
tcagaaggtgtatcaaagaaccattccggctttttcacatcttctttttcattcttcaagttccttccatatgcattgtgggacattcccaacactaagc |
269 |
Q |
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| T |
32343603 |
tcagatggtgtatcaaagaaccattccggctttttcacatcttctttttcattcttcaagttccttccatatgcattgtgggacattcccaacactaagc |
32343702 |
T |
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| Q |
270 |
atattcctacaaccaaaatgaacttcatctccatgacagtattaatctatgtgactatagtaaaacacacttcacttacacaactttatacaaatatgca |
369 |
Q |
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| T |
32343703 |
atatccccacaaccaaaatgaacttcatctccatgacaatattaatctatgtgactatagtaaaacacacttcacttacaccactttatacaaatatgca |
32343802 |
T |
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| Q |
370 |
ccatatacgcatgcattt |
387 |
Q |
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| T |
32343803 |
ccatatacgcatgcattt |
32343820 |
T |
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